RNA id: TCONS_00007470


Basic Information

Item Value
RNA id TCONS_00007470
length 2895
RNA type mRNA
GC content 0.44
exon number 15
gene id XLOC_003901
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7001948 ~ 7030047 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGCTGTAAAACTGTTTTGAAGTTTGTTCTGCGACAACTTATTAAACTACACATTCTCTCTGCCCCTATAGAATGTGTAATGTCTGTCCCTATAATGCCTACGTGTGTACAAAGCATACTATCTAACACAGCCCCAGGGTGTAGTTACCTGTACTTCTGCACTACACAGGTATGACTGTGCTCTCAGTCTAAAGCAGAAGCATGTCTGAGCAATACAGTTCATGGGACTCCATTGCCATTTAACTTTACTTTGGATTCTACACTGATTGGGGAACTGAGGATTTGGACCACAACCATGTTGACCTATCTGGTGCTTGTGggaCTTATAAGTCTGTGCAGCACGGAGCCTCTCAGACGCAATAGAAGATCCTGGATTATAGACTCATTTGACATTGTGGAAGAACACCCAGGACCTTTTCCTTATGAACTGGGGCAGGCAAGTAAAATTTATATTCGTTTATCACAAAACAACCTgccataatgtatttttaaaaataacatccCTCAAATAATCTAGATCAAGCTGGATCGTAAATATTTAGTGGAGTTCGGGCTAAAGGGCAAAGGCGTGGATGAAAACCCAAAGGGTGTCCTGTCTATTGATTCCAAGACAGGAGTCATCATGGTCCACCGTAAAGTTGACTATGAGCAGTTCAGCATTCTGATGGTAAGAGGAATCTGATGTTTCCTCAGATGTTTATCTGTTGGTATAGGTTTAAAGCTTACGTCTTTATCCCTTCAAAGCTGACCTTTCAAGCGAGAAACAAGTCCAACTCGGCTATTGACACACAACTAGGCATGGAGGTCAACATATTGGACATCAACGACAACCCGCCGGTCTTCCAGAGAAAACTCTATGATGTTACTGTAAATGAAGCAGCAAAGCAAGGTGACTTTATTGTTGGTGTTTTAGCCATTGATAAGGATGCAGCAGGAACTCCGAATTCCACCATTGATTATAAAATCATTTCTGTGGTGCCGACTACTAAAAATGTGGAATTCTACATCCAAGACAATGGAGCAATATCCTTTAAAGGATGCTTTGATTATGAGGTGGCTAGTAAATACACTATAATGGTTGAGGCAAAGGACCGTGGAGAGGTTGTAAAGTTGTCCAGCACAGCAACTGTAGTAATCAACCTTCAGGATGGAAACAACCACATACCGGTCATCACAGGGCAAACGGGTTCAGGTAATGTGGTGGAAGGGACAAATGGTACCTCCCCCCTTAAAATACACACGACCGATGCTGATACTCGTCCCACTGCTGCATGGAGGGTCAGATACTCCATAGAAGGGGATAAAGGTGGTCACTTTTCCATTCGTACTGATCCAGACAACAACGATGGCATAATTACAGTGGTTAAGCCTCTGGACTTTGAAAAACAAACAGAACATAAACTCAGCATCTCCGTAGAGAACGAAGAGCCGTACTTCTCTTGTGTGGTAAAGGAGAGATCTCCAAGTGGCCTCTGGACTGTCATCTCAAATCCATCAAAACCATCCTCTAAGAATATTACCATCACAGTGGAGGATGCAAACGACCCTCCATATTTTACAGATCCTCAACGGAAAGTCATTTTGGAAGAAAATGGTCCTATTGGAGCCTTTGTGGACCGAGTAAAAGCAATAGATCCTGACACTGGACGTCCCCATAAACTAGAGTATTCCATTGAACACGACCCTGCTGGCTGGTTCAGAGTGGACAAAACAACTGGAGAAATCTTTGTAAAAGAGACAGTGGACAGAGAATCCAGTTATGTGACCAACGGGACTTACACAATTTTTGTCCTAGTGACAGAAAAAGATGACCATCCTCCAATGACAAGCACTGCCACGATTCAGCTCTATGTGGAAGACAAGAATGATAACGTCCCCTTGCTAAAGGAAAACAgagtgtctgtctgtcagtctgacCAAGCGTCAAGTGCAGAGGTCTCAGCGCAGGACCTTGATGGAGATCCATACAGTGGGCCGTTCAGTTTTGAAATTATAGGAGACCATAAGGAAGGATGGAGTTTTGACCCAAGCTatgGTTACACCGTGCGTTTGGTGAAGGATAAAAGAGTTCATGCGAGCCTGTACACACTGAGTGTGAAAATCTCTGATAAGCAGGGCAGGTTCGTGCACCAGAACCTTACTGTCGCTGCATGTGATTGTGCCGTCTCACCAAACTGCCTGCTCCAGCGCAACACACAGCAAAAAGTGGGAAATGGTCTGTTAGGAATTACCATTTTTGCCACTCTCATGGTTTTGGCTTTTCTGCTGCTGTCCCTCACTTGCTCTTGCGGAAGTGTGAAGTCTCTGGTACAAGTAGACAATGTCTTAGAAGATGCCCTTCTGTCATCAAATATTGAGAAACCAGGCACAGATTGTATgGTCCCGACAACTCTTCTGAGGAAAgcatctgtctgtcagtcagtcaaggAAACAACTATTGTCAATGACTGGGCTCAAAAGAAAGCTGATGTTCAGCAGGTATCTAGCAAAAATGTGACTTCTGCTGGAAGGGAGTCTTGGTCTAGAGACAGATCACAGTACTTTTCCCGTGAGAATCAGTCATGGATGCGGAAACAGTACCAAATCGACAACTACTACCAGGGCTCCACATTTAGCAGGAGGGGCTCACAAAGAAGAGCGAAAACCTATTTCATCAACCAATCCACTTTACAAAGCTTGCTAACTCAGAGGTTACATTTAATGCAATCTCAAGAAAATGAGTTGCTGGATTATGAGCCTCATCTTTACGCCTTTGAGGACAACACAGACAAGCTTGCAGATCTGGACCCCATAGACCTGCCCAGTAATGAGTTTAATCCTGATCTGCTTTCTGACCTTGGACCTGCATTTAAGAAACTGGCTTCTATCTGTAATCCAGGGTCAAAACAGAATTGA

Function

GO:

id name namespace
GO:0098609 cell-cell adhesion biological_process
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141215-13 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000180369

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007460 lncRNA downstream 131975 6869316 ~ 6870035 (-) False XLOC_003897
TCONS_00008754 lncRNA downstream 202072 6792546 ~ 6799938 (-) True XLOC_003895
TCONS_00008753 lncRNA downstream 545710 6455034 ~ 6456300 (-) True XLOC_003893
TCONS_00008752 lncRNA downstream 570662 6429973 ~ 6431348 (-) True XLOC_003891
TCONS_00008751 lncRNA downstream 570878 6429973 ~ 6431132 (-) False XLOC_003891
TCONS_00008451 lncRNA upstream 315753 7345800 ~ 7349497 (-) False XLOC_003908
TCONS_00008755 lncRNA upstream 315879 7345926 ~ 7349386 (-) False XLOC_003908
TCONS_00008756 lncRNA upstream 315879 7345926 ~ 7349427 (-) True XLOC_003908
TCONS_00007486 lncRNA upstream 332377 7362424 ~ 7365383 (-) True XLOC_003910
TCONS_00008757 lncRNA upstream 743785 7773832 ~ 7775701 (-) False XLOC_003912
TCONS_00007466 mRNA downstream 12412 6986589 ~ 6989598 (-) False XLOC_003900
TCONS_00007467 mRNA downstream 12412 6986913 ~ 6989598 (-) False XLOC_003900
TCONS_00007468 mRNA downstream 12412 6987353 ~ 6989598 (-) True XLOC_003900
TCONS_00007465 mRNA downstream 16547 6977268 ~ 6985463 (-) True XLOC_003899
TCONS_00007464 mRNA downstream 27988 6944966 ~ 6974022 (-) True XLOC_003898
TCONS_00007472 mRNA upstream 9212 7039259 ~ 7050825 (-) False XLOC_003902
TCONS_00007473 mRNA upstream 10821 7040868 ~ 7078392 (-) False XLOC_003902
TCONS_00007474 mRNA upstream 20082 7050129 ~ 7078475 (-) True XLOC_003902
TCONS_00007475 mRNA upstream 77751 7107798 ~ 7139555 (-) False XLOC_003903
TCONS_00007476 mRNA upstream 82546 7112593 ~ 7147540 (-) True XLOC_003903
TCONS_00007463 other downstream 53992 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007456 other downstream 219934 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007441 other downstream 795421 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007438 other downstream 929944 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007400 other downstream 3048173 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007477 other upstream 86200 7116247 ~ 7116363 (-) True XLOC_003904
TCONS_00007494 other upstream 1081322 8111369 ~ 8126195 (-) True XLOC_003913
TCONS_00007548 other upstream 4295475 11325522 ~ 11331050 (-) False XLOC_003936
TCONS_00007549 other upstream 4300678 11330725 ~ 11331090 (-) True XLOC_003936
TCONS_00007551 other upstream 4308757 11338804 ~ 11339100 (-) True XLOC_003938

Expression Profile

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