Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00007467 |
| length | 899 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 3 |
| gene id | XLOC_003900 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 6986589 ~ 6989598 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070928-39 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. |
| ensembl_id | ENSDART00000173242 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00007460 | lncRNA | downstream | 116878 | 6869316 ~ 6870035 (-) | False | XLOC_003897 |
| TCONS_00008754 | lncRNA | downstream | 186975 | 6792546 ~ 6799938 (-) | True | XLOC_003895 |
| TCONS_00008753 | lncRNA | downstream | 530613 | 6455034 ~ 6456300 (-) | True | XLOC_003893 |
| TCONS_00008752 | lncRNA | downstream | 555565 | 6429973 ~ 6431348 (-) | True | XLOC_003891 |
| TCONS_00008751 | lncRNA | downstream | 555781 | 6429973 ~ 6431132 (-) | False | XLOC_003891 |
| TCONS_00008451 | lncRNA | upstream | 356202 | 7345800 ~ 7349497 (-) | False | XLOC_003908 |
| TCONS_00008755 | lncRNA | upstream | 356328 | 7345926 ~ 7349386 (-) | False | XLOC_003908 |
| TCONS_00008756 | lncRNA | upstream | 356328 | 7345926 ~ 7349427 (-) | True | XLOC_003908 |
| TCONS_00007486 | lncRNA | upstream | 372826 | 7362424 ~ 7365383 (-) | True | XLOC_003910 |
| TCONS_00008757 | lncRNA | upstream | 784234 | 7773832 ~ 7775701 (-) | False | XLOC_003912 |
| TCONS_00007465 | mRNA | downstream | 1450 | 6977268 ~ 6985463 (-) | True | XLOC_003899 |
| TCONS_00007464 | mRNA | downstream | 12891 | 6944966 ~ 6974022 (-) | True | XLOC_003898 |
| TCONS_00007462 | mRNA | downstream | 16806 | 6941389 ~ 6970107 (-) | False | XLOC_003898 |
| TCONS_00007459 | mRNA | downstream | 106188 | 6869312 ~ 6880725 (-) | False | XLOC_003897 |
| TCONS_00007469 | mRNA | upstream | 12350 | 7001948 ~ 7029897 (-) | False | XLOC_003901 |
| TCONS_00007471 | mRNA | upstream | 12412 | 7002010 ~ 7030047 (-) | False | XLOC_003901 |
| TCONS_00007470 | mRNA | upstream | 12412 | 7002010 ~ 7030047 (-) | True | XLOC_003901 |
| TCONS_00007472 | mRNA | upstream | 49661 | 7039259 ~ 7050825 (-) | False | XLOC_003902 |
| TCONS_00007473 | mRNA | upstream | 51270 | 7040868 ~ 7078392 (-) | False | XLOC_003902 |
| TCONS_00007463 | other | downstream | 38895 | 6944300 ~ 6948018 (-) | False | XLOC_003898 |
| TCONS_00007456 | other | downstream | 204837 | 6780708 ~ 6782076 (-) | True | XLOC_003894 |
| TCONS_00007441 | other | downstream | 780324 | 6197276 ~ 6206589 (-) | False | XLOC_003884 |
| TCONS_00007438 | other | downstream | 914847 | 6071960 ~ 6072066 (-) | True | XLOC_003881 |
| TCONS_00007400 | other | downstream | 3033076 | 3953723 ~ 3953837 (-) | True | XLOC_003853 |
| TCONS_00007477 | other | upstream | 126649 | 7116247 ~ 7116363 (-) | True | XLOC_003904 |
| TCONS_00007494 | other | upstream | 1121771 | 8111369 ~ 8126195 (-) | True | XLOC_003913 |
| TCONS_00007548 | other | upstream | 4335924 | 11325522 ~ 11331050 (-) | False | XLOC_003936 |
| TCONS_00007549 | other | upstream | 4341127 | 11330725 ~ 11331090 (-) | True | XLOC_003936 |
| TCONS_00007551 | other | upstream | 4349206 | 11338804 ~ 11339100 (-) | True | XLOC_003938 |
