XLOC_003901 (cdh27)


Basic Information

Item Value
gene id XLOC_003901
gene name cdh27
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7001948 ~ 7030047 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007469
GTACTTCTGCACTACACAGGTATGACTGTGCTCTCAGTCTAAAGCAGAAGCATGTCTGAGCAATACAGTTCATGGGACTCCATTGCCATTTAACTTTACTTTGGATTCTACACTGATTGGGGAACTGAGGATTTGGACCACAACCATGTTGACCTATCTGGTGCTTGTGggaCTTATAAGTCTGTGCAGCACGGAGCCTCTCAGACGCAATAGAAGATCCTGGATTATAGACTCATTTGACATTGTGGAAGAACACCCAGGACCTTTTCCTTATGAACTGGGGCAGATCAAGCTGGATCGTAAATATTTAGTGGAGTTCGGGCTAAAGGGCAAAGGCGTGGATGAAAACCCAAAGGGTGTCCTGTCTATTGATTCCAAGACAGGAGTCATCATGGTCCACCGTAAAGTTGACTATGAGCAGTTCAGCATTCTGATGCTGACCTTTCAAGCGAGAAACAAGTCCAACTCGGCTATTGACACACAACTAGGCATGGAGGTCAACATATTGGACATCAACGACAACCCGCCGGTCTTCCAGAGAAAACTCTATGATGTTACTGTAAATGAAGCAGCAAAGCAAGGTGACTTTATTGTTGGTGTTTTAGCCATTGATAAGGATGCAGCAGGAACTCCGAATTCCACCATTGATTATAAAATCATTTCTGTGGTGCCGACTACTAAAAATGTGGAATTCTACATCCAAGACAATGGAGCAATATCCTTTAAAGGATGCTTTGATTATGAGGTGGCTAGTAAATACACTATAATGGTTGAGGCAAAGGACCGTGGAGAGGTTGTAAAGTTGTCCAGCACAGCAACTGTAGTAATCAACCTTCAGGATGGAAACAACCACATACCGGTCATCACAGGGCAAACGGGTTCAGGTAATGTGGTGGAAGGGACAAATGGTACCTCCCCCCTTAAAATACACACGACCGATGCTGATACTCGTCCCACTGCTGCATGGAGGGTCAGATACTCCATAGAAGGGGATAAAGGTGGTCACTTTTCCATTCGTACTGATCCAGACAACAACGATGGCATAATTACAGTGGTTAAGCCTCTGGACTTTGAAAAACAAACAGAACATAAACTCAGCATCTCCGTAGAGAACGAAGAGCCGTACTTCTCTTGTGTGGTAAAGGAGAGATCTCCAAGTGGCCTCTGGACTGTCATCTCAAATCCATCAAAACCATCCTCTAAGAATATTACCATCACAGTGGAGGATGCAAACGACCCTCCATATTTTACAGATCCTCAACGGAAAGTCATTTTGGAAGAAAATGGTCCTATTGGAGCCTTTGTGGACCGAGTAAAAGCAATAGATCCTGACACTGGACGTCCCCATAAACTAGAGTATTCCATTGAACACGACCCTGCTGGCTGGTTCAGAGTGGACAAAACAACTGGAGAAATCTTTGTAAAAGAGACAGTGGACAGAGAATCCAGTTATGTGACCAACGGGACTTACACAATTTTTGTCCTAGTGACAGAAAAAGATGACCATCCTCCAATGACAAGCACTGCCACGATTCAGCTCTATGTGGAAGACAAGAATGATAACGTCCCCTTGCTAAAGGAAAACAgagtgtctgtctgtcagtctgacCAAGCGTCAAGTGCAGAGGTCTCAGCGCAGGACCTTGATGGAGATCCATACAGTGGGCCGTTCAGTTTTGAAATTATAGGAGACCATAAGGAAGGATGGAGTTTTGACCCAAGCTatgGTTACACCGTGCGTTTGGTGAAGGATAAAAGAGTTCATGCGAGCCTGTACACACTGAGTGTGAAAATCTCTGATAAGCAGGGCAGGTTCGTGCACCAGAACCTTACTGTCGCTGCATGTGATTGTGCCGTCTCACCAAACTGCCTGCTCCAGCGCAACACACAGCAAAAAGTGGGAAATGGTCTGTTAGGAATTACCATTTTTGCCACTCTCATGGTTTTGGCTTTTCTGCTGCTGTCCCTCACTTGCTCTTGCGGAAGTGTGAAGTCTCTGGTACAAGTAGACAATGTCTTAGAAGATGCCCTTCTGTCATCAAATATTGAGAAACCAGGCACAGATTGTATgGTCCCGACAACTCTTCTGAGGAAAgcatctgtctgtcagtcagtcaaggAAACAACTATTGTCAATGACTGGGCTCAAAAGAAAGCTGATGTTCAGCAGGTATCTAGCAAAAATGTGACTTCTGCTGGAAGGGAGTCTTGGTCTAGAGACAGATCACAGTACTTTTCCCGTGAGAATCAGTCATGGATGCGGAAACAGTACCAAATCGACAACTACTACCAGGGCTCCACATTTAGCAGGAGGGGCTCACAAAGAAGAGCGAAAACCTATTTCATCAACCAATCCACTTTACAAAGCTTGCTAACTCAGAGGTTACATTTAATGCAATCTCAAGAAAATGAGTTGCTGGATTATGAGCCTCATCTTTACGCCTTTGAGGACAACACAGACAAGCTTGCAGATCTGGACCCCATAGACCTGCCCAGTAATGAGTTTAATCCTGATCTGCTTTCTGACCTTGGACCTGCATTTAAGAAACTGGCTTCTATCTGTAATCCAGGGTCAAAACAGAATTGATGATTGTCTAGTGATCAGTTACTGATCAGTGAGGGTCCAGTTAATTGTTACATAGGGGGGGG
>TCONS_00007471
CCGCTGTAAAACTGTTTTGAAGTTTGTTCTGCGACAACTTATTAAACTACACATTCTCTCTGCCCCTATAGAATGTGTAATGTCTGTCCCTATAATGCCTACGTGTGTACAAAGCATACTATCTAACACAGCCCCAGGGTGTAGTTACCTGTACTTCTGCACTACACAGGTATGACTGTGCTCTCAGTCTAAAGCAGAAGCATGTCTGAGCAATACAGTTCATGGGACTCCATTGCCATTTAACTTTACTTTGGATTCTACACTGATTGGGGAACTGAGGATTTGGACCACAACCATGTTGACCTATCTGGTGCTTGTGggaCTTATAAGTCTGTGCAGCACGGAGCCTCTCAGACGCAATAGAAGATCCTGGATTATAGACTCATTTGACATTGTGGAAGAACACCCAGGACCTTTTCCTTATGAACTGGGGCAGGCAAGTAAAATTTATATTCGTTTATCACAAAACAACCTgccataatgtatttttaaaaataacatccCTCAAATAATCTAGATCAAGCTGGATCGTAAATATTTAGTGGAGTTCGGGCTAAAGGGCAAAGGCGTGGATGAAAACCCAAAGGGTGTCCTGTCTATTGATTCCAAGACAGGAGTCATCATGGTCCACCGTAAAGTTGACTATGAGCAGTTCAGCATTCTGATGCTGACCTTTCAAGCGAGAAACAAGTCCAACTCGGCTATTGACACACAACTAGGCATGGAGGTCAACATATTGGACATCAACGACAACCCGCCGGTCTTCCAGAGAAAACTCTATGATGTTACTGTAAATGAAGCAGCAAAGCAAGGTGACTTTATTGTTGGTGTTTTAGCCATTGATAAGGATGCAGCAGGAACTCCGAATTCCACCATTGATTATAAAATCATTTCTGTGGTGCCGACTACTAAAAATGTGGAATTCTACATCCAAGACAATGGAGCAATATCCTTTAAAGGATGCTTTGATTATGAGGTGGCTAGTAAATACACTATAATGGTTGAGGCAAAGGACCGTGGAGAGGTTGTAAAGTTGTCCAGCACAGCAACTGTAGTAATCAACCTTCAGGATGGAAACAACCACATACCGGTCATCACAGGGCAAACGGGTTCAGGTAATGTGGTGGAAGGGACAAATGGTACCTCCCCCCTTAAAATACACACGACCGATGCTGATACTCGTCCCACTGCTGCATGGAGGGTCAGATACTCCATAGAAGGGGATAAAGGTGGTCACTTTTCCATTCGTACTGATCCAGACAACAACGATGGCATAATTACAGTGGTTAAGCCTCTGGACTTTGAAAAACAAACAGAACATAAACTCAGCATCTCCGTAGAGAACGAAGAGCCGTACTTCTCTTGTGTGGTAAAGGAGAGATCTCCAAGTGGCCTCTGGACTGTCATCTCAAATCCATCAAAACCATCCTCTAAGAATATTACCATCACAGTGGAGGATGCAAACGACCCTCCATATTTTACAGATCCTCAACGGAAAGTCATTTTGGAAGAAAATGGTCCTATTGGAGCCTTTGTGGACCGAGTAAAAGCAATAGATCCTGACACTGGACGTCCCCATAAACTAGAGTATTCCATTGAACACGACCCTGCTGGCTGGTTCAGAGTGGACAAAACAACTGGAGAAATCTTTGTAAAAGAGACAGTGGACAGAGAATCCAGTTATGTGACCAACGGGACTTACACAATTTTTGTCCTAGTGACAGAAAAAGATGACCATCCTCCAATGACAAGCACTGCCACGATTCAGCTCTATGTGGAAGACAAGAATGATAACGTCCCCTTGCTAAAGGAAAACAgagtgtctgtctgtcagtctgacCAAGCGTCAAGTGCAGAGGTCTCAGCGCAGGACCTTGATGGAGATCCATACAGTGGGCCGTTCAGTTTTGAAATTATAGGAGACCATAAGGAAGGATGGAGTTTTGACCCAAGCTatgGTTACACCGTGCGTTTGGTGAAGGATAAAAGAGTTCATGCGAGCCTGTACACACTGAGTGTGAAAATCTCTGATAAGCAGGGCAGGTTCGTGCACCAGAACCTTACTGTCGCTGCATGTGATTGTGCCGTCTCACCAAACTGCCTGCTCCAGCGCAACACACAGCAAAAAGTGGGAAATGGTCTGTTAGGAATTACCATTTTTGCCACTCTCATGGTTTTGGCTTTTCTGCTGCTGTCCCTCACTTGCTCTTGCGGAAGTGTGAAGTCTCTGGTACAAGTAGACAATGTCTTAGAAGATGCCCTTCTGTCATCAAATATTGAGAAACCAGGCACAGATTGTATgGTCCCGACAACTCTTCTGAGGAAAgcatctgtctgtcagtcagtcaaggAAACAACTATTGTCAATGACTGGGCTCAAAAGAAAGCTGATGTTCAGCAGGTATCTAGCAAAAATGTGACTTCTGCTGGAAGGGAGTCTTGGTCTAGAGACAGATCACAGTACTTTTCCCGTGAGAATCAGTCATGGATGCGGAAACAGTACCAAATCGACAACTACTACCAGGGCTCCACATTTAGCAGGAGGGGCTCACAAAGAAGAGCGAAAACCTATTTCATCAACCAATCCACTTTACAAAGCTTGCTAACTCAGAGGTTACATTTAATGCAATCTCAAGAAAATGAGTTGCTGGATTATGAGCCTCATCTTTACGCCTTTGAGGACAACACAGACAAGCTTGCAGATCTGGACCCCATAGACCTGCCCAGTAATGAGTTTAATCCTGATCTGCTTTCTGACCTTGGACCTGCATTTAAGAAACTGGCTTCTATCTGTAATCCAGGGTCAAAACAGAATTGA
>TCONS_00007470
CCGCTGTAAAACTGTTTTGAAGTTTGTTCTGCGACAACTTATTAAACTACACATTCTCTCTGCCCCTATAGAATGTGTAATGTCTGTCCCTATAATGCCTACGTGTGTACAAAGCATACTATCTAACACAGCCCCAGGGTGTAGTTACCTGTACTTCTGCACTACACAGGTATGACTGTGCTCTCAGTCTAAAGCAGAAGCATGTCTGAGCAATACAGTTCATGGGACTCCATTGCCATTTAACTTTACTTTGGATTCTACACTGATTGGGGAACTGAGGATTTGGACCACAACCATGTTGACCTATCTGGTGCTTGTGggaCTTATAAGTCTGTGCAGCACGGAGCCTCTCAGACGCAATAGAAGATCCTGGATTATAGACTCATTTGACATTGTGGAAGAACACCCAGGACCTTTTCCTTATGAACTGGGGCAGGCAAGTAAAATTTATATTCGTTTATCACAAAACAACCTgccataatgtatttttaaaaataacatccCTCAAATAATCTAGATCAAGCTGGATCGTAAATATTTAGTGGAGTTCGGGCTAAAGGGCAAAGGCGTGGATGAAAACCCAAAGGGTGTCCTGTCTATTGATTCCAAGACAGGAGTCATCATGGTCCACCGTAAAGTTGACTATGAGCAGTTCAGCATTCTGATGGTAAGAGGAATCTGATGTTTCCTCAGATGTTTATCTGTTGGTATAGGTTTAAAGCTTACGTCTTTATCCCTTCAAAGCTGACCTTTCAAGCGAGAAACAAGTCCAACTCGGCTATTGACACACAACTAGGCATGGAGGTCAACATATTGGACATCAACGACAACCCGCCGGTCTTCCAGAGAAAACTCTATGATGTTACTGTAAATGAAGCAGCAAAGCAAGGTGACTTTATTGTTGGTGTTTTAGCCATTGATAAGGATGCAGCAGGAACTCCGAATTCCACCATTGATTATAAAATCATTTCTGTGGTGCCGACTACTAAAAATGTGGAATTCTACATCCAAGACAATGGAGCAATATCCTTTAAAGGATGCTTTGATTATGAGGTGGCTAGTAAATACACTATAATGGTTGAGGCAAAGGACCGTGGAGAGGTTGTAAAGTTGTCCAGCACAGCAACTGTAGTAATCAACCTTCAGGATGGAAACAACCACATACCGGTCATCACAGGGCAAACGGGTTCAGGTAATGTGGTGGAAGGGACAAATGGTACCTCCCCCCTTAAAATACACACGACCGATGCTGATACTCGTCCCACTGCTGCATGGAGGGTCAGATACTCCATAGAAGGGGATAAAGGTGGTCACTTTTCCATTCGTACTGATCCAGACAACAACGATGGCATAATTACAGTGGTTAAGCCTCTGGACTTTGAAAAACAAACAGAACATAAACTCAGCATCTCCGTAGAGAACGAAGAGCCGTACTTCTCTTGTGTGGTAAAGGAGAGATCTCCAAGTGGCCTCTGGACTGTCATCTCAAATCCATCAAAACCATCCTCTAAGAATATTACCATCACAGTGGAGGATGCAAACGACCCTCCATATTTTACAGATCCTCAACGGAAAGTCATTTTGGAAGAAAATGGTCCTATTGGAGCCTTTGTGGACCGAGTAAAAGCAATAGATCCTGACACTGGACGTCCCCATAAACTAGAGTATTCCATTGAACACGACCCTGCTGGCTGGTTCAGAGTGGACAAAACAACTGGAGAAATCTTTGTAAAAGAGACAGTGGACAGAGAATCCAGTTATGTGACCAACGGGACTTACACAATTTTTGTCCTAGTGACAGAAAAAGATGACCATCCTCCAATGACAAGCACTGCCACGATTCAGCTCTATGTGGAAGACAAGAATGATAACGTCCCCTTGCTAAAGGAAAACAgagtgtctgtctgtcagtctgacCAAGCGTCAAGTGCAGAGGTCTCAGCGCAGGACCTTGATGGAGATCCATACAGTGGGCCGTTCAGTTTTGAAATTATAGGAGACCATAAGGAAGGATGGAGTTTTGACCCAAGCTatgGTTACACCGTGCGTTTGGTGAAGGATAAAAGAGTTCATGCGAGCCTGTACACACTGAGTGTGAAAATCTCTGATAAGCAGGGCAGGTTCGTGCACCAGAACCTTACTGTCGCTGCATGTGATTGTGCCGTCTCACCAAACTGCCTGCTCCAGCGCAACACACAGCAAAAAGTGGGAAATGGTCTGTTAGGAATTACCATTTTTGCCACTCTCATGGTTTTGGCTTTTCTGCTGCTGTCCCTCACTTGCTCTTGCGGAAGTGTGAAGTCTCTGGTACAAGTAGACAATGTCTTAGAAGATGCCCTTCTGTCATCAAATATTGAGAAACCAGGCACAGATTGTATgGTCCCGACAACTCTTCTGAGGAAAgcatctgtctgtcagtcagtcaaggAAACAACTATTGTCAATGACTGGGCTCAAAAGAAAGCTGATGTTCAGCAGGTATCTAGCAAAAATGTGACTTCTGCTGGAAGGGAGTCTTGGTCTAGAGACAGATCACAGTACTTTTCCCGTGAGAATCAGTCATGGATGCGGAAACAGTACCAAATCGACAACTACTACCAGGGCTCCACATTTAGCAGGAGGGGCTCACAAAGAAGAGCGAAAACCTATTTCATCAACCAATCCACTTTACAAAGCTTGCTAACTCAGAGGTTACATTTAATGCAATCTCAAGAAAATGAGTTGCTGGATTATGAGCCTCATCTTTACGCCTTTGAGGACAACACAGACAAGCTTGCAGATCTGGACCCCATAGACCTGCCCAGTAATGAGTTTAATCCTGATCTGCTTTCTGACCTTGGACCTGCATTTAAGAAACTGGCTTCTATCTGTAATCCAGGGTCAAAACAGAATTGA

Function

symbol description
cdh27 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0098609 cell-cell adhesion biological_process
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141215-13 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000055093

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007469 False 2649 mRNA 0.45 17 7001948 7029897
TCONS_00007471 False 2818 mRNA 0.44 16 7002010 7030047
TCONS_00007470 True 2895 mRNA 0.44 15 7002010 7030047

Neighbor

gene id symbol gene type direction distance location
XLOC_003900 zgc:173548 coding downstream 12350 6986589 ~ 6989598 (-)
XLOC_003899 si:ch211-253b8.2 coding downstream 16485 6977268 ~ 6985463 (-)
XLOC_003898 comp coding downstream 27926 6941389 ~ 6974022 (-)
XLOC_003897 ddx49 coding downstream 121223 6869312 ~ 6880725 (-)
XLOC_003896 lsm4 coding downstream 133474 6859876 ~ 6868474 (-)
XLOC_003902 si:ch211-253b8.5 coding upstream 9212 7039259 ~ 7078475 (-)
XLOC_003903 bmp7a coding upstream 77751 7107798 ~ 7147540 (-)
XLOC_003904 CR925817.2 coding upstream 86200 7116247 ~ 7116363 (-)
XLOC_003905 smim7 coding upstream 121532 7151579 ~ 7156693 (-)
XLOC_003906 zgc:113223 coding upstream 223030 7253077 ~ 7261717 (-)
XLOC_003938 BX324177.10 misc upstream 4308757 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 4337547 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 4340408 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 4350857 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 4353786 11383833 ~ 11384130 (-)
XLOC_003895 NA non-coding downstream 202010 6792546 ~ 6799938 (-)
XLOC_003894 BX936438.1 non-coding downstream 219872 6780708 ~ 6782076 (-)
XLOC_003893 NA non-coding downstream 545648 6455034 ~ 6456300 (-)
XLOC_003891 NA non-coding downstream 570600 6429973 ~ 6431348 (-)
XLOC_003887 NA non-coding downstream 677391 6316654 ~ 6324557 (-)
XLOC_003908 NA non-coding upstream 315753 7345800 ~ 7349497 (-)
XLOC_003912 NA non-coding upstream 743785 7773832 ~ 7796332 (-)
XLOC_003920 CR847563.2 non-coding upstream 1446914 8476961 ~ 8515750 (-)
XLOC_003922 NA non-coding upstream 1953604 8983651 ~ 9523184 (-)

Expression


Co-expression Network