Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_003903 |
| gene name | bmp7a |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 7107798 ~ 7147540 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| bmp7a | Enables identical protein binding activity and protein heterodimerization activity. Acts upstream of or within several processes, including determination of bilateral symmetry; negative regulation of endodermal cell fate specification; and post-anal tail morphogenesis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including epiphysis; gastrula cell; margin; prechordal plate; and tail bud. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human BMP7 (bone morphogenetic protein 7). |
| id | name | namespace |
|---|---|---|
| GO:0065003 | protein-containing complex assembly | biological_process |
| GO:0036342 | post-anal tail morphogenesis | biological_process |
| GO:0003143 | embryonic heart tube morphogenesis | biological_process |
| GO:0060395 | SMAD protein signal transduction | biological_process |
| GO:0048264 | determination of ventral identity | biological_process |
| GO:0030509 | BMP signaling pathway | biological_process |
| GO:0009953 | dorsal/ventral pattern formation | biological_process |
| GO:0007368 | determination of left/right symmetry | biological_process |
| GO:0021703 | locus ceruleus development | biological_process |
| GO:0003303 | BMP signaling pathway involved in heart jogging | biological_process |
| GO:0001947 | heart looping | biological_process |
| GO:0042664 | negative regulation of endodermal cell fate specification | biological_process |
| GO:0010862 | positive regulation of pathway-restricted SMAD protein phosphorylation | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0005125 | cytokine activity | molecular_function |
| GO:0042802 | identical protein binding | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| GO:0070700 | BMP receptor binding | molecular_function |
| GO:0008083 | growth factor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-000208-25 | Enables identical protein binding activity and protein heterodimerization activity. Acts upstream of or within several processes, including determination of bilateral symmetry; negative regulation of endodermal cell fate specification; and post-anal tail morphogenesis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including epiphysis; gastrula cell; margin; prechordal plate; and tail bud. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human BMP7 (bone morphogenetic protein 7). |
| ensembl_id | ENSDARG00000018260 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00007475 | False | 3384 | mRNA | 0.45 | 7 | 7107798 | 7139555 |
| TCONS_00007476 | True | 973 | mRNA | 0.54 | 5 | 7112593 | 7147540 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_003902 | si:ch211-253b8.5 | coding | downstream | 29323 | 7039259 ~ 7078475 (-) |
| XLOC_003901 | cdh27 | coding | downstream | 77751 | 7001948 ~ 7030047 (-) |
| XLOC_003900 | zgc:173548 | coding | downstream | 118200 | 6986589 ~ 6989598 (-) |
| XLOC_003899 | si:ch211-253b8.2 | coding | downstream | 122335 | 6977268 ~ 6985463 (-) |
| XLOC_003898 | comp | coding | downstream | 133776 | 6941389 ~ 6974022 (-) |
| XLOC_003905 | smim7 | coding | upstream | 4039 | 7151579 ~ 7156693 (-) |
| XLOC_003906 | zgc:113223 | coding | upstream | 105537 | 7253077 ~ 7261717 (-) |
| XLOC_003907 | apc2 | coding | upstream | 133700 | 7281240 ~ 7320211 (-) |
| XLOC_003908 | NA | coding | upstream | 198260 | 7345800 ~ 7349497 (-) |
| XLOC_003909 | si:dkey-197i20.6 | coding | upstream | 203386 | 7350926 ~ 7355995 (-) |
| XLOC_003938 | BX324177.10 | misc | upstream | 4191264 | 11338804 ~ 11339100 (-) |
| XLOC_003942 | BX324177.17 | misc | upstream | 4220054 | 11367594 ~ 11367890 (-) |
| XLOC_003943 | BX324177.3 | misc | upstream | 4222915 | 11370455 ~ 11370653 (-) |
| XLOC_003944 | BX324177.4 | misc | upstream | 4233364 | 11380904 ~ 11381204 (-) |
| XLOC_003945 | BX324177.6 | misc | upstream | 4236293 | 11383833 ~ 11384130 (-) |
| XLOC_003895 | NA | non-coding | downstream | 307860 | 6792546 ~ 6799938 (-) |
| XLOC_003894 | BX936438.1 | non-coding | downstream | 325722 | 6780708 ~ 6782076 (-) |
| XLOC_003893 | NA | non-coding | downstream | 651498 | 6455034 ~ 6456300 (-) |
| XLOC_003891 | NA | non-coding | downstream | 676450 | 6429973 ~ 6431348 (-) |
| XLOC_003887 | NA | non-coding | downstream | 783241 | 6316654 ~ 6324557 (-) |
| XLOC_003912 | NA | non-coding | upstream | 626292 | 7773832 ~ 7796332 (-) |
| XLOC_003920 | CR847563.2 | non-coding | upstream | 1329421 | 8476961 ~ 8515750 (-) |
| XLOC_003922 | NA | non-coding | upstream | 1836111 | 8983651 ~ 9523184 (-) |
| XLOC_003923 | CR788237.2 | non-coding | upstream | 2138283 | 9285823 ~ 9286476 (-) |
