RNA id: TCONS_00008446


Basic Information

Item Value
RNA id TCONS_00008446
length 407
lncRNA type sense_over
GC content 0.50
exon number 4
gene id XLOC_003868
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 4492467 ~ 4931999 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCAGATGTTCTAGTGTGTCCTCTTAGTGTGGTCGAGAAGTTTCGGGATCTTCATCCTGATGAAGTGACGGATCTGTTCATGACCACCCGGAGAGTTTCCAGTCTAATCGAGAAACACTTCCAGGCCTCCTCCCTCACTATCTGCATACAGGACGGACCTGAGGCGGGACAGACGGTGAAGCATGTCCATGTCCATGCTGCCGAGGAAGGCTGGAGACTTCGAGAAGAATGACAGCATCTATGATGAGCTCCAGAAACTTGACCGGGAAAGAGAGGATGTTCCTTCCCAATGGAGATCAGATGAAGAGATGGCTAAAGAGGCCAGTGAATTACACAGCCTCTTCAGTTAATGTGTCTGCAGGTCATCATCTGCTGGAAGGTGTGGATCAAACTAGGTTGGATTTAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008744 lncRNA downstream 21793 4435273 ~ 4470674 (-) True XLOC_003867
TCONS_00008445 lncRNA downstream 139034 4350478 ~ 4353433 (-) True XLOC_003866
TCONS_00008742 lncRNA downstream 142126 4309276 ~ 4350341 (-) False XLOC_003865
TCONS_00008743 lncRNA downstream 158469 4311297 ~ 4333998 (-) True XLOC_003865
TCONS_00007421 lncRNA downstream 189900 4299091 ~ 4302567 (-) True XLOC_003864
TCONS_00008745 lncRNA upstream 191004 4786977 ~ 4931999 (-) True XLOC_003868
TCONS_00008746 lncRNA upstream 213742 4809715 ~ 4852148 (-) True XLOC_003869
TCONS_00008747 lncRNA upstream 918405 5514378 ~ 5515164 (-) True XLOC_003870
TCONS_00008447 lncRNA upstream 960917 5556890 ~ 5563421 (-) True XLOC_003871
TCONS_00008748 lncRNA upstream 1177123 5773096 ~ 5774902 (-) True XLOC_003872
TCONS_00007420 mRNA downstream 190216 4296726 ~ 4302251 (-) True XLOC_003863
TCONS_00007418 mRNA downstream 191636 4295835 ~ 4300831 (-) False XLOC_003863
TCONS_00007419 mRNA downstream 191636 4296560 ~ 4300831 (-) False XLOC_003863
TCONS_00007416 mRNA downstream 194179 4295212 ~ 4298288 (-) False XLOC_003863
TCONS_00007424 mRNA upstream 958190 5554163 ~ 5563498 (-) False XLOC_003871
TCONS_00007425 mRNA upstream 1259950 5855923 ~ 5865744 (-) False XLOC_003873
TCONS_00007427 mRNA upstream 1337662 5933635 ~ 5939861 (-) False XLOC_003874
TCONS_00007428 mRNA upstream 1338215 5934188 ~ 5939460 (-) True XLOC_003874
TCONS_00007429 mRNA upstream 1349213 5945186 ~ 5953648 (-) False XLOC_003875
TCONS_00007400 other downstream 538630 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007330 other downstream 3403952 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 3512719 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 4032537 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 4140766 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007438 other upstream 1475987 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 1601303 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 2184735 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 2348327 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007477 other upstream 2520274 7116247 ~ 7116363 (-) True XLOC_003904

Expression Profile

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