RNA id: TCONS_00008742


Basic Information

Item Value
RNA id TCONS_00008742
length 1029
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id XLOC_003865
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 4309276 ~ 4350341 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTGCCATTGTTCTGACTAATGGTTGTTAGTGTGCATCTGCCCTATGCTGCCTCTGATTGGCAAACGATGGAAATGTACTCTATCTAGGCCAATCATCATGTTCTCAGTTATATCATGTTCACAGACATCATGTTCCCGCCCCAGCCACACATAAACGCACCCCAGAGAAAGAAAGGTCCTACAGCTGAGAGAGACGCTTCTCGCATGAAAACTGCTTCAGTGTTCTCAACTATAgttGTCCCATCCTGCTCTCGCTGGTTTTGTTCCTCGGCTATCGATGAGAGGAATTGTCTGGACTGCTGCCACTGATCTTAATGCTTTTTTCCTGAGATGGCGTAGAAAAATGTTTAGCTGTGTGACCCAACGATACAGCAGTGGCTGTTTCTTTTAATTATGCCCATTGTTGTTTAGCACAGTGTTTGCGCGTAGGAACAGCAGTGTGGGTGTCTCCACGAGGGCCGCCGAGTTGTGAGAGCTCTCTTTGCATCTTAATGTCCTTGCTTTCAATAAATGACCGGAGAGAAGAGAGCGGCACAGCGGTGCGACTGAAACAAAAAAGCAGCATTTTGTATTGTGCCGGAGCCTGTCCTCATTCCAGCTGTGTTGTGGAGAATCACAGCTCACTGGCTCCCCCTGCTGAACGGAGAGTGGTGTGCAGGCGGACACAGCAGTTGGTTTTAGGGTAAATAAAACATCTCATGTTAACATTGTTTTACTCATCATATATTTTGTCTATAGCCTAAATTATATAATGTGAGGTAGAGGTAATATATAGATATAAGTGGATGTGGTAAAAATAAACTGGCAAACGCAGGCCTGTAGGCAGCCTGGTAAAAGGGATGGATCTTTTTCTCAAAAAGTCTGGcctttttttgcagttatatgcctcattttcattttaatgcatttattcgTTTTGttttcggctaaatccctttatcaatctggggtcgctacagcagaatgaaccaccaacttatccagcatatgttttatgcagcggatgcccttccagacacaaccggac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007421 lncRNA downstream 6709 4299091 ~ 4302567 (-) True XLOC_003864
TCONS_00007412 lncRNA downstream 19180 4286630 ~ 4290096 (-) True XLOC_003862
TCONS_00008444 lncRNA downstream 27582 4264048 ~ 4281694 (-) True XLOC_003860
TCONS_00007408 lncRNA downstream 114579 4187022 ~ 4194697 (-) True XLOC_003858
TCONS_00008741 lncRNA downstream 176462 4128297 ~ 4132814 (-) True XLOC_003856
TCONS_00008445 lncRNA upstream 137 4350478 ~ 4353433 (-) True XLOC_003866
TCONS_00008744 lncRNA upstream 84932 4435273 ~ 4470674 (-) True XLOC_003867
TCONS_00008446 lncRNA upstream 142126 4492467 ~ 4595973 (-) False XLOC_003868
TCONS_00008745 lncRNA upstream 436636 4786977 ~ 4931999 (-) True XLOC_003868
TCONS_00008746 lncRNA upstream 459374 4809715 ~ 4852148 (-) True XLOC_003869
TCONS_00007420 mRNA downstream 7025 4296726 ~ 4302251 (-) True XLOC_003863
TCONS_00007413 mRNA downstream 8445 4293288 ~ 4300831 (-) False XLOC_003863
TCONS_00007414 mRNA downstream 8445 4293314 ~ 4300831 (-) False XLOC_003863
TCONS_00007418 mRNA downstream 8445 4295835 ~ 4300831 (-) False XLOC_003863
TCONS_00007419 mRNA downstream 8445 4296560 ~ 4300831 (-) False XLOC_003863
TCONS_00007422 mRNA upstream 142126 4492467 ~ 4787083 (-) False XLOC_003868
TCONS_00007423 mRNA upstream 244134 4594475 ~ 4596431 (-) False XLOC_003868
TCONS_00007424 mRNA upstream 1203822 5554163 ~ 5563498 (-) False XLOC_003871
TCONS_00007425 mRNA upstream 1505582 5855923 ~ 5865744 (-) False XLOC_003873
TCONS_00007427 mRNA upstream 1583294 5933635 ~ 5939861 (-) False XLOC_003874
TCONS_00007400 other downstream 355439 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007330 other downstream 3220761 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 3329528 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 3849346 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 3957575 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007438 other upstream 1721619 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 1846935 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 2430367 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 2593959 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007477 other upstream 2765906 7116247 ~ 7116363 (-) True XLOC_003904

Expression Profile

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