RNA id: TCONS_00008444


Basic Information

Item Value
RNA id TCONS_00008444
length 404
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_003860
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 4264048 ~ 4281694 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCCAACCTTCAGTTGTGTGCTGCGAGTTTCTCTATGAGGATTTTTAGTGTCTGACTGTGTGAATGATTCTCTTTGACAGAGTGCATGATGGGAAGGAGACAGCGAGAGATTACACATCATCAAAGCCATGTTTGCAGGAGAAACGTGTTTGCCGTTTGAGCGAGGGATATTTCAGAAATGCTGAAGCATATCAAAAGTGCCAGCACTCTCTCGGTTTAGCACACAGACTTcagacttttttttgtaattacatcTCCAGAAATATCTCCTCGACCCATTATATTACAGAAGGAGGGTTTAGATCTTCCATACTCGGACAGATGGAGGGAAACCTGTCTCAACACTCACAGCTGGGATCTTTGCACTTGACCACTTTAATTACATCACCTGCATTTCCTGCGTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007408 lncRNA downstream 69351 4187022 ~ 4194697 (-) True XLOC_003858
TCONS_00008741 lncRNA downstream 131234 4128297 ~ 4132814 (-) True XLOC_003856
TCONS_00007403 lncRNA downstream 276239 3983995 ~ 3987809 (-) True XLOC_003854
TCONS_00007402 lncRNA downstream 279567 3974943 ~ 3984481 (-) False XLOC_003854
TCONS_00007389 lncRNA downstream 634860 3625121 ~ 3629188 (-) True XLOC_003848
TCONS_00007412 lncRNA upstream 4936 4286630 ~ 4290096 (-) True XLOC_003862
TCONS_00007421 lncRNA upstream 17397 4299091 ~ 4302567 (-) True XLOC_003864
TCONS_00008742 lncRNA upstream 27582 4309276 ~ 4350341 (-) False XLOC_003865
TCONS_00008743 lncRNA upstream 29603 4311297 ~ 4333998 (-) True XLOC_003865
TCONS_00008445 lncRNA upstream 68784 4350478 ~ 4353433 (-) True XLOC_003866
TCONS_00007409 mRNA downstream 28237 4205567 ~ 4235811 (-) False XLOC_003859
TCONS_00007410 mRNA downstream 43881 4205896 ~ 4220167 (-) True XLOC_003859
TCONS_00007407 mRNA downstream 88275 4148808 ~ 4175773 (-) True XLOC_003857
TCONS_00007406 mRNA downstream 126806 4038040 ~ 4137242 (-) False XLOC_003856
TCONS_00007404 mRNA downstream 239961 3991911 ~ 4024087 (-) False XLOC_003855
TCONS_00007411 mRNA upstream 1320 4283014 ~ 4286010 (-) True XLOC_003861
TCONS_00007413 mRNA upstream 11594 4293288 ~ 4300831 (-) False XLOC_003863
TCONS_00007414 mRNA upstream 11620 4293314 ~ 4300831 (-) False XLOC_003863
TCONS_00007415 mRNA upstream 11912 4293606 ~ 4298288 (-) False XLOC_003863
TCONS_00007416 mRNA upstream 13518 4295212 ~ 4298288 (-) False XLOC_003863
TCONS_00007400 other downstream 310211 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007330 other downstream 3175533 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 3284300 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 3804118 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 3912347 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007438 other upstream 1790266 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 1915582 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 2499014 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 2662606 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007477 other upstream 2834553 7116247 ~ 7116363 (-) True XLOC_003904

Expression Profile

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