RNA id: TCONS_00007409


Basic Information

Item Value
RNA id TCONS_00007409
length 1141
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_003859
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 4205567 ~ 4235811 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agagagagagagagtgagtgagtgagtgagtgtgtatgtgttgcGTGTATGTAAAAGAATCGAGCTGGGAGGAGCAAAAGGGGCGTGGCTTTGGTGCCTGCTGGTCACATGATTGTTTACACTGTGAGAGAGGAGGCATGTGTGAAGAACAGCAGAAACTCAGGAGAAACAACACTCGCATAATCATGTAGGATATCtgacacacacttaaacacatacacacacatacacagaacaGGATGGAGCACAAACACAGTCTGTATCCCTCTGAAACTCAGCCCAGCAGACCCAGAGATGTGCTTGTTAAATCAGCTTCAGCATACGCCGATATCCAATGGGAACAGCCCCATCAACCGAAAAACCCAGATCCATTTGGTTACCCTCATCGCGAAATCCCCCCGCTGGCCAGTTACGCACCTCAGCCTGATTACATGACAGGGGACGATGATCTCATCAAACCCAAAAAGCTGATTAATCCAGTGAAAGCCTCTAAAAGCCACCAGGAGCTTCATCGGGAGTTGCTGTTGAACCATAAAAGAGGTGCTGGTGTGGAGAATAAATCTGAACTGCAGCGTGTGCTGGAGCAAAGGAAGCGAGAGCAGATGATAAAGCAGAGAAAGCTAGAGGAGGAGGCCAGGAGGAAGATCTCTCCACTGGAACAGGAGCTTCTCAAAAGACAGCAGAAACTAGAGGAGTTGGAGAAGGAGCAAGAAAAGCTTGAGGAAGACAACTGCAATGCGCCGGAGTTTGTTAAAGTGAAGGAGAACCTGAGACGAACGTCATTTACAAGTTCTGGAGAAAAGGAGGTGTAAACAGACTGGATGTatacgtgtgtgtttgtgcacagcCAGTAACATAGAGACCTGCTGCAGCTCCTAAACAACATCAACACGACTGCGCTTTTCGGTTTCCAGTCTCACACCAACCATATCTTCATCCCCGGCAGGTTCAGAGAGGCCAGAGATGAGGACCAAAAAACCCAAAAAGAGCCTCTGCAGCATCAGAATGTAAAGCTCGAAGGGGTTTTTGGGAGACTGTATTGTTCTGGGATGGACCGGATGGATTAAAGATGAACTGTCCAGGGATGCGTTTCCTAAACAGTGACGTAACTCACAGCTGAACTActatagtatgatgcatc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000121716

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007408 lncRNA downstream 10870 4187022 ~ 4194697 (-) True XLOC_003858
TCONS_00008741 lncRNA downstream 72753 4128297 ~ 4132814 (-) True XLOC_003856
TCONS_00007403 lncRNA downstream 217758 3983995 ~ 3987809 (-) True XLOC_003854
TCONS_00007402 lncRNA downstream 221086 3974943 ~ 3984481 (-) False XLOC_003854
TCONS_00007389 lncRNA downstream 576379 3625121 ~ 3629188 (-) True XLOC_003848
TCONS_00008444 lncRNA upstream 28237 4264048 ~ 4281694 (-) True XLOC_003860
TCONS_00007412 lncRNA upstream 50819 4286630 ~ 4290096 (-) True XLOC_003862
TCONS_00007421 lncRNA upstream 63280 4299091 ~ 4302567 (-) True XLOC_003864
TCONS_00008742 lncRNA upstream 73465 4309276 ~ 4350341 (-) False XLOC_003865
TCONS_00008743 lncRNA upstream 75486 4311297 ~ 4333998 (-) True XLOC_003865
TCONS_00007407 mRNA downstream 29794 4148808 ~ 4175773 (-) True XLOC_003857
TCONS_00007406 mRNA downstream 68325 4038040 ~ 4137242 (-) False XLOC_003856
TCONS_00007404 mRNA downstream 181480 3991911 ~ 4024087 (-) False XLOC_003855
TCONS_00007405 mRNA downstream 181627 3994747 ~ 4023940 (-) True XLOC_003855
TCONS_00007401 mRNA downstream 217682 3971716 ~ 3987885 (-) False XLOC_003854
TCONS_00007411 mRNA upstream 47203 4283014 ~ 4286010 (-) True XLOC_003861
TCONS_00007413 mRNA upstream 57477 4293288 ~ 4300831 (-) False XLOC_003863
TCONS_00007414 mRNA upstream 57503 4293314 ~ 4300831 (-) False XLOC_003863
TCONS_00007415 mRNA upstream 57795 4293606 ~ 4298288 (-) False XLOC_003863
TCONS_00007416 mRNA upstream 59401 4295212 ~ 4298288 (-) False XLOC_003863
TCONS_00007400 other downstream 251730 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007330 other downstream 3117052 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 3225819 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 3745637 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 3853866 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007438 other upstream 1836149 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 1961465 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 2544897 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 2708489 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007477 other upstream 2880436 7116247 ~ 7116363 (-) True XLOC_003904

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU278205 True 201 lncRNA 0.39 1 CI01000057 2849172 ~ 2849372 (-)