XLOC_003848 (itih3a)


Basic Information

Item Value
gene id XLOC_003848
gene name itih3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3614326 ~ 3629216 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007387
GTTCAGAGTCTTCACAAATCCTGAATGTGTTAAAGTGGATGGTGTGCCATGTCTTCAAGGTGGATTTTATGCGTGTTTTTGTACATCTCTTTTACTTCATGGTCATATGAGACTCTCTTCATTTCAAAGAGCAATGGACATTGGCACGACGACACCACCATGACCAAACACTTAAAGAAGCGAAGTGTGAGCAGTGCTGAGATAGAGGTGCAGAGTGTGAAGGTGGACTGCAAAGTCACATCCCGTTTCGCCCACACCGTCATGACCACTAAAGCTCTCAATAAGGCCAACGTCTCACAGGAAGTGTTCTTTGAGGTGGAGTTACCCAAGACCTCCTTCATCACCAACTTCAGCATggagATTGATGGCAAGATGTACACGGGTGTGGTGAAGGAAAAAGAGAAGGCCCAGCAGCAGTATCAGAGGGCTGTTTCTTCAGGCCGGACTGCTGGTTTAGTCAAGGCTTCGGGTAGAAAAATGGAAAAGTTTTCTGTTTCAGTGAACGTCGCAGCAAAGAGCAGTGTCACATTCATTCTGACCCATGAGGAACTTCTTCAGCGGAGGTTTAGCAAATATGAGCTCATGATCAGAGTCAAACCCAAACAGCTGGTCCAGCACTTTGAGATAGTGGCAGATATCTACGAGCCTCAGGGAATTGCATTTGTGGATGCCTACGGTACATTCATCACCAATGAACTGCTGCCTCTAGTGGACAAAACTGTCACTGATAAGAAGGCCCATGTGTCTTTCTCTCCAACACTGGATCAACAGAGGAAATGCACCGAGTGTGACGGCACACTCATTGATGGAGATTTCTTCATTACGTATGATGTCAATCGTCCTCATGACATCGGTGACATCCAGATTGTGAACGGATACTTTGTCCATTTTTTTGCACCAGCCAATCTTCCACGCGTGCCAAAGATGGTTGTTTTTGTAATAGACAACAGTTACTCTATGGTGGGAAATAAAATGGCACAGACCAAAGAAGCTTTGGGGACCATTCTGGGTGAACTCCCCGAAGACGACTACTTTGCGATCATAGTCTTTTCCACCACTTTCGTTGTATGGCGGCCATATTTAAGCAAAGCAACCGAAGAAAATGTGAAAGAAGCCCAAGAATATGTCAAAACAATTGAAGTTATTGGTGGTACAGAATTGCATGATGCAACTATACATGGTGTGGAAATGCTGTACGCAGCACAAAGGAATGGTACAGCGCCAAAGAATATGGTACTGATGATGATCTTGCTGACTGATGGACAACCAAACCAATATCCAAGATCTCTTCCTGAGATCCAAGAGAGCATTCGCAAAGCCATCGATGGGAACATCACTCTGTTCGGTTTGGCCTTTGGTAACGATGCAGATTATGGATTTTTGGATACTTTAAGCAAGCAAAACAATGGCATTGTTCGCAGAATTTATGAGGACTCAGACGCTCCGCTTCAGCTGAAGGGATTTTATGAAGAAGTGTCAAGTCCTCTACTGTCAGAGGTGAATTTTCACTATCCGGACAACACAGTTAACTCATTGACAAGAAGTCATTTTAAACAGCTATTCAACGGCTCTGAGATCATGGTTGCTGGTCGACTTGATGACTTAAATGACATAAACAACTTCGACATTGAAGTTTCTGCACAAGGGTTTGACAACAATTTTGAGATCAAAGGTCAGGCAAATGCACAAAAGTGGGATACAATCTTTCCTGATGACGAATATATCTTTGGGGACTTCACCGAGCGTCTCTGGGCATATCTGACCATCCAAGAGCTCTTGGAAAAAAAAGACCAGGGAACACCAGAGGAGAAAGGCAATGCCACTGCTGATGCTTTGAGCCTTTCGTTAAAATACAACTTCGTTACACCTCTTACCTCCATGGTCGTTACTAAACCGGAAGATGAATTCAACAATGACACATTAATTGCTGACAAGTTGACTGAAGAGGAACGTGGAAAACTTCAGAGATATGgttTTGCAGGTTACTCAGCCATGCCAGTCAGCTCACATGCACCTACATATTATGTTGATGGAGATCCACATTTCATCATTGAGCTGCCAGATAAGAATGATGCTCTGTGCTTTAACATTGATGACGAACCTGGTACCATTTTCAACCTGGTTAGAGACCCACTTACAGGTATTGTGGTCAATGGCCAAACCATTGGTGATAAGAAAGTCGTTCCAGGGAAAAAGGTAAACACCTATTTTGGGCGCTTTGGGATCATCCATGAGAAGTTTGATGTCAGAATGACTGTGAGCACAAAGGAAATCTCAGTAATCGAGAAAGGAAAACATGTAAAACTGTTCTGGGCTGAAGCTGCTACGGTTAAAGGGCCCAACATGGATCTGCAGGTGAACAAAGATCGTAGTTTAACAGTGACTTTGAGAAATTCTGTCAAATTTCTTATCATCCTGCACAAAGTCTGGGAGAGGCATCCGTATCATCAAGACTATCTTGGATTCTACACCTTGGACAGTCACCTCTTTTCAAGCAATGTCCATGGCCTGCTtgGTCAGTTCTACCATGGACTGGAATTTAAAGTGGGTGAACCATTTCCAGGAAAGGATCCAAACAAAGTAGATGCCATCATGTCAGTGAAAGGACAAGAGCTTGTAGTTACCAGGGGTTTCCAGAGAGATTTTAGACAGGATGTGAAAAATGGAGAACAAGTGCCCTGTTGGTTCATTCATAATAATGGCACTGGACTGCTTGATGGAGTTCTTACAGACTACATCGTCTCTGGTCTATTCAAGACAATTTGAGAACAAGTCATCTCAAGTCATATTAGAAACAAGTATTATGAGATCGCAATTCTTCAACATACAGCAAAACAGAAATAATTGACAGTCTTAGTACTTGTTTTTAATACACATATATTTTCAATACACATACCAGCCAAGTTTCTTTACTCTCTCTTCTCTGAGAAAGACACTGTATGGTttgtatttcaataaaaaaaagaaatgtgaaa
>TCONS_00007388
AAATCCTGAATGTGTTAAAGTGGATGGTGTGCCATGTCTTCAAGGTGGATTTTATGCGTGTTTTTGTACATCTCTTTTACTTCATGGTCATATGAGACTCTCTTCATTTCAAAGAGCAATGGACATTGGAAGCGAAGTGTGAGCAGTGCTGAGATAGAGGTGCAGAGTGTGAAGGTGGACTGCAAAGTCACATCCCGTTTCGCCCACACCGTCATGACCACTAAAGCTCTCAATAAGGCCAACGTCTCACAGGAAGTGTTCTTTGAGGTGGAGTTACCCAAGACCTCCTTCATCACCAACTTCAGCATggagATTGATGGCAAGATGTACACGGGTGTGGTGAAGGAAAAAGAGAAGGCCCAGCAGCAGTATCAGAGGGCTGTTTCTTCAGGCCGGACTGCTGGTTTAGTCAAGGCTTCGGGTAGAAAAATGGAAAAGTTTTCTGTTTCAGTGAACGTCGCAGCAAAGAGCAGTGTCACATTCATTCTGACCCATGAGGAACTTCTTCAGCGGAGGTTTAGCAAATATGAGCTCATGATCAGAGTCAAACCCAAACAGCTGGTCCAGCACTTTGAGATAGTGGCAGATATCTACGAGCCTCAGGGAATTGCATTTGTGGATGCCTACGGTACATTCATCACCAATGAACTGCTGCCTCTAGTGGACAAAACTGTCACTGATAAGAAGGCCCATGTGTCTTTCTCTCCAACACTGGATCAACAGAGGAAATGCACCGAGTGTGACGGCACACTCATTGATGGAGATTTCTTCATTACGTATGATGTCAATCGTCCTCATGACATCGGTGAC
>TCONS_00007389
GTTAAAGTGGATGGTGTGCCATGTCTTCAAGGTGGATTTTATGCGTGTTTTTGTACATCTCTTTTACTTCATGGTCATATGAGACTCTCTTCATTTCAAAGAGCAATGGACATTGGCACGACGACACCACCATGACCAAACACTTAAAGAAGCGAAGTGTGAGCAGTGCTGAGATAGAGGTGCAGAGTGTGAAGGTGGACTGCAAAGTCACATCCCGTTTCGCCCACACCGTCATGACCACTAAAGCTCTCAATAAGGCCAACGTCTCACAGGAAGTGTTCTTTGAGGTGGAGTTACCCAAGACCTCCTTCATCACCAACTTCAGCATggagATTGATGGCAAGATGTACACGGGTGTGGTGAAGGAAAAAGAGAAGGCCCAGCAGCAGTATCAGAGGGCTGTTTCTTCAGGCCGGACTGCTGGTTTAGTCAAGTGGGAAGACAAAAACTAAAAGCCAACACAACTTTTAGACTGCTTAATGCAAACTTGAAACTAACGAATTGATATTTTCCCAGGGCTTCGGGTAGAAAAATGGAAAAGTTTTCTGTTTCAGTGAACGTCGCAGCAAAGAGCAGTGTCACATTCATTCTGACCCATGAGGAACTTCTTCAGCGGAGGTTTAGCAAATATGAGCTCATGATCAGAGTCAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000055036

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007387 False 2975 mRNA 0.43 22 3614326 3629216
TCONS_00007388 False 810 mRNA 0.46 7 3623856 3629201
TCONS_00007389 True 651 lncRNA 0.45 5 3625121 3629188

Neighbor

gene id symbol gene type direction distance location
XLOC_003847 dnajc16l coding downstream 768 3593127 ~ 3613558 (-)
XLOC_003846 si:dkey-33m11.7 coding downstream 40015 3563091 ~ 3574311 (-)
XLOC_003845 CAMK2N1 coding downstream 62259 3550370 ~ 3552067 (-)
XLOC_003844 ddx19 coding downstream 78745 3523358 ~ 3535581 (-)
XLOC_003843 NA coding downstream 119362 3385104 ~ 3494964 (-)
XLOC_003849 itih1 coding upstream 1411 3630627 ~ 3647014 (-)
XLOC_003850 gata2a coding upstream 218226 3847442 ~ 3865472 (-)
XLOC_003851 rpn1 coding upstream 263170 3892386 ~ 3907937 (-)
XLOC_003852 pbrm1 coding upstream 280540 3909756 ~ 3959889 (-)
XLOC_003853 CR450797.1 coding upstream 324507 3953723 ~ 3953837 (-)
XLOC_003938 BX324177.10 misc upstream 7709588 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 7738378 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 7741239 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 7751688 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 7754617 11383833 ~ 11384130 (-)
XLOC_003838 NA non-coding downstream 631944 2976603 ~ 2982382 (-)
XLOC_003837 NA non-coding downstream 770443 2842098 ~ 2843883 (-)
XLOC_003835 NA non-coding downstream 853960 2756893 ~ 2760366 (-)
XLOC_003826 NA non-coding downstream 1165812 2446641 ~ 2448514 (-)
XLOC_003858 BX248331.2 non-coding upstream 557806 4187022 ~ 4194697 (-)
XLOC_003860 NA non-coding upstream 634832 4264048 ~ 4281694 (-)
XLOC_003862 BX248331.4 non-coding upstream 657414 4286630 ~ 4290096 (-)
XLOC_003864 CT033790.2 non-coding upstream 669875 4299091 ~ 4302567 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G104044 NA non-coding NC_048566.1 CM023220.2 582235 ~ 585015 (+)
tiger barb (Puntius tetrazona) G78903 NA non-coding NC_056709.1 CM032078.1 3231127 ~ 3232742 (-)
mexican tetra (Astyanax mexicanus) G193961 itih3a,itih3,LOC108435863,LOC108435869 non-coding NC_035918.1 CM008321.1 31144331 ~ 31145937 (-)