XLOC_003845 (CAMK2N1)


Basic Information

Item Value
gene id XLOC_003845
gene name CAMK2N1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3550370 ~ 3552067 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007382
AGTGACGTTCATTCTCCATCAGGGATCTTTGTTTTGCATCGCTTCCCGATTTGCATTTGTTTCTCAGGTTTTCCATCCGACGCTCCAGCCGCCGAAAAGCCCCGCGCGCGCGCAAAGGCGCATCCCCCCGCGAGCTCGCGTCCGTTCACGTCTACAGAATCGGGAAAAGTGGGAATAACCGCGAGCTGAAAGGAGGGAAATTACATGTATTCGCCCCGCGTCCCAGACATCACCATCCACTCGCGGAGACACGTGCGATAGAGGTAAACAGCCGAGAGATCCGCCTGGACGAACCCCGATCCATTCAGCAGCAGATATACTGTAGCGTACAGCATGTCGGATGTATTGCCGTACAACGAGGACAAAATGACTCATTATGGCAACGACGGCGACGAGGAACACCTTTCCTTCACCTGCCGCCTCCAAGACACTAACAACTTTTTCGGTGGCAACCAGAATAAACGACCACCGAAGCTCGGGCAGATCGGGCGAAGCAAAAGAGTGGAGGAAGACAACGATGGCGAAGCGCTGGACAAGAGCACAGAGAAGTCCTCATCAGCGTGAAGGAACCCAAAGACTCTCTGATGTGTACATCCAAAGACTCTCTCTTCCCAAGCACTCCACGCATTCTCCCCAAAATCTCTCCATTGTCCAGGGTTTACATTGTGATGGACTGAATTAACCTGGAAGATTATGGCCCAGCAGGGGGGCTTTGAAGGAATACTGTGTTTTCCAATCTACTCTCTCCGAGATATGTGCAATGACAGGGCTCGGTCTCATTAAGCAGCAGACCGGGCTCTAATGTAGTCTTTTGGTTTCTAATGAAGCAATTCGATAAGACTGAGCAAACCATATACCATTAACACCCAGCTAGTATCTTCCCGCTTGTAGCTTACTAGTGGTGTTAATGGTATTCTAGCAACGTCGACCCTTTTCTTCCATGGTGGACCTTCAAAGAGGCTCCACCACgtatgtaaaaacacacacaaaaaaaaagctatttattaaATCTTTGGATACCTATTTTGCAGTGTTGAAGGTTGAGCAAACGTTTTATATATAGAGAACGACGACGATGACGAGATGCATTGGATTAATGTTTTGTATGTAGCTAAACTGTGATTCTCGTGATCCATTTCATTCATTTGATGTTTGATCTGGAATGTCAGTTTGAGGACCTTATTGTCATAAAAAAGCAGCATATTTACTGTAGATGTGCCAAATTATCCTGAGGGAAACATATATCGCTGTGCTTTCTTGGTGTGCACAGGTTTATGAATATTCGGTGGTCATGTTTACAGGGCTCTTTCATACTTGTGATGTATTCTAGTCATGCATGACGAAACCTTAAGACCTCAAGAACGTCTtcttgaaatatataaatatatatatataccgtatTTATCTCACAGAACATTTCTACAGAATATCTGTTATAATAAAGATTTGGAGAAACAG
>TCONS_00008740
AGTGACGTTCATTCTCCATCAGGGATCTTTGTTTTGCATCGCTTCCCGATTTGCATTTGTTTCTCAGGTTTTCCATCCGACGCTCCAGCCGCCGAAAAGCCCCGCGCGCGCGCAAAGGCGCATCCCCCCGCGAGCTCGCGTCCGTTCACGTCTACAGAATCGGGAAAAGTGGGAATAACCGCGAGCTGAAAGGAGGGAAATTACATGTATTCGCCCCGCGTCCCAGACATCACCATCCACTCGCGGAGACACGTGCGATAGAGGTAAACAGCCGAGAGATCCGCCTGGACGAACCCCGATCCATTCAGCAGCAGATATACTGTAGCGTACAGCATGTCGGATGTATTGCCGTACAACGAGGACAAAATGACTCATTATGACAACGATGGCGAAGCGCTGGACAAGAGCACAGAGAAGTCCTCATCAGCGTGAAGGAACCCAAAGACTCTCTGATGTGTACATCCAAAGACTCTCTCTTCCCAAGCACTCCACGCATTCTCCCCAAAATCTCTCCATTGTCCAGGGTTTACATTGTGATGGACTGAATTAACCTGGAAGATTATGGCCCAGCAGGGGGGCTTTGAAGGAATACTGTGTTTTCCAATCTACTCTCTCCGAGATATGTGCAATGACAGGGCTCGGTCTCATTAAGCAGCAGACCGGGCTCTAATGTAGTCTTTTGGTTTCTAATGAAGCAATTCGATAAGACTGAGCAAACCATATACCATTAACACCCAGCTAGTATCTTCCCGCTTGTAGCTTACTAGTGGTGTTAATGGTATTCTAGCAACGTCGACCCTTTTCTTCCATGGTGGACCTTCAAAGAGGCTCCACCACgtatgtaaaaacacacacaaaaaaaaagctatttattaaATCTTTGGATACCTATTTTGCAGTGTTGAAGGTTGAGCAAACGTTTTATATATAGAGAACGACGACGATGACGAGATGCATTGGATTAATGTTTTGTATGTAGCTAAACTGTGATTCTCGTGATCCATTTCATTCATTTGATGTTTGATCTGGAATGTCAGTTTGAGGACCTTATTGTCATAAAAAAGCAGCATATTTACTGTAGATGTGCCAAATTATCCTGAGGGAAACATATATCGCTGTGCTTTCTTGGTGTGCACAGGTTTATGAATATTCGGTGGTCATGTTTACAGGGCTCTTTCATACTTGTGATGTATTCTAGTCATGCATGACGAAACCTTAAGACCTCAAGAACGTCTtcttgaaatatataaatatatatatataccgtatTTATCTCACAGAACATTTCTACAGAATATCTGTTATAATAAAGATTTGGAGAAACA

Function

symbol description
camk2n1 Predicted to enable calcium-dependent protein kinase inhibitor activity and protein kinase binding activity. Predicted to be involved in negative regulation of protein kinase activity. Human ortholog(s) of this gene implicated in ovarian cancer; ovarian carcinoma; and prostate adenocarcinoma. Orthologous to human CAMK2N1 (calcium/calmodulin dependent protein kinase II inhibitor 1).

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000101387

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007382 False 1458 mRNA 0.45 2 3550370 3552067
TCONS_00008740 True 1325 lncRNA 0.44 2 3550371 3552067

Neighbor

gene id symbol gene type direction distance location
XLOC_003844 ddx19 coding downstream 14789 3523358 ~ 3535581 (-)
XLOC_003843 NA coding downstream 55406 3385104 ~ 3494964 (-)
XLOC_003842 suox coding downstream 169027 3345405 ~ 3381343 (-)
XLOC_003841 tuba2 coding downstream 206907 3336524 ~ 3343463 (-)
XLOC_003840 prph coding downstream 216120 3320598 ~ 3334250 (-)
XLOC_003846 si:dkey-33m11.7 coding upstream 11024 3563091 ~ 3574311 (-)
XLOC_003847 dnajc16l coding upstream 41060 3593127 ~ 3613558 (-)
XLOC_003848 itih3a coding upstream 62259 3614326 ~ 3629216 (-)
XLOC_003849 itih1 coding upstream 78560 3630627 ~ 3647014 (-)
XLOC_003850 gata2a coding upstream 295375 3847442 ~ 3865472 (-)
XLOC_003938 BX324177.10 misc upstream 7786737 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 7815527 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 7818388 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 7828837 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 7831766 11383833 ~ 11384130 (-)
XLOC_003838 NA non-coding downstream 567988 2976603 ~ 2982382 (-)
XLOC_003837 NA non-coding downstream 706487 2842098 ~ 2843883 (-)
XLOC_003835 NA non-coding downstream 790004 2756893 ~ 2760366 (-)
XLOC_003826 NA non-coding downstream 1101856 2446641 ~ 2448514 (-)
XLOC_003853 CR450797.1 non-coding upstream 401656 3953723 ~ 3953837 (-)
XLOC_003858 BX248331.2 non-coding upstream 634955 4187022 ~ 4194697 (-)
XLOC_003860 NA non-coding upstream 711981 4264048 ~ 4281694 (-)
XLOC_003862 BX248331.4 non-coding upstream 734563 4286630 ~ 4290096 (-)
XLOC_003864 CT033790.2 non-coding upstream 747024 4299091 ~ 4302567 (-)

Expression


Co-expression Network