XLOC_003843


Basic Information

Item Value
gene id XLOC_003843
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3385104 ~ 3494964 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008739
AACGAATCCACACACGGATCAGTGTGTCACAGTGACACTGTTTTACCGGGGAACGGGATATACTCTGGCGATTTACATTCAGTCGCACTACAGCCACCGGCAATGCGCTGCTTTAATTTTAACTGAAAGACGGAATACCTGCAAACATGACGGTGGATTTTGAGGAATGTATTAAAGATTCTCCCCGATTCAGGGCGTCTCCTCGTTCGCTGTCGTCTTTCGGCAGTTTCCGCACATGGCTTATTTACACTCCTCCAAAGCACTGACAGAGGAGACTCCATCAGGACACACACCTGCCGTGAAGACTGCCTGCACTGTTTTTACTATCTGAGAGTAATATATGAGAATGCTGAAATCTGATACCATCAATTGATTCgtttttatatttgatatttccCCTTGGGCTGAGATTTTAAGCttaaatttctgttttttttaattattattattattttaatAATGAATGAAGCATCTTTCCTAGTGTTTGTTTCCCGTGACAATTAAAGGGAGATTTATTCTGAA
>TCONS_00007378
AACGAATCCACACACGGATCAGTGTGTCACAGTGACACTGTTTTACCGGGGAACGGGATATACTCTGGCGATTTACATTCAGTCGCACTACAGCCACCGGCAATGCGCTGCTTTAATTTTAACTGAAAGACGGAATACCTGCAAACATGACGGTGGATTTTGAGGAATGTATTAAAGATTCTCCCCGATTCAGGGCGAATATTGATGAAGTAGAGACTGATGTGGTGGAAATCGAAGCCAAGCTTGACAAGCTGGTGAAGCTATGCAGTGGTATGATCGAAGCGGGACGGGCGTACGCCACTGCCAATAAACTCTTCGTCAATGGCATTCGAGACCTGTCTCACCACTGCAAAAAAGAGGAGATGATCTCAGAATGTCTTGAAAAGTGTGGCGAGAGTCTTCAGGAAATCGTCAACTATCACATGATCCTGTTCGATCAGGCCCAGAGATCCGTAAAGCAACAGTTGCACAGTTTTGTGAAGGAGGATGTTCGTAAGTTTAAAGAGACGAAGAAGCAGTTTGATAAGGTGCGGGAGGATATGGAGATCGCCCAGGTGAAGAACGCGCAGGCGCCCCGCAACAAACCACACGAGGTGGAGGAGGCGACCAGCACCCTCATCACCACCCGCAAGTGCTTCAGACACCTCGCCCTCGACTACGTACTGCAGATCAATGTTCTTCAGGCCaaaaagaaatttgagattttgGATTCGATGCTGTCCTTCATGCAGGCTCAGTATGGGCTTTTCCACCAGGGCTTCAACCTTCTGGATGAGATCGACCCCTACATGAAGAAACTGGCGGCGGAGCTGGATCAGCTGGTTATAGATTCAGCAATGGAGAAACGAGAGATGGAGCACAAACATGCCACCATACAGCAAAGAATCACATCACAGGACTTTGCATACGATGACTCTAAAGTGGAGTTCAATGTTGACGCTCCTAACGGCGTGGTGATGGAGGGATACCTGTTCAAGAGGGCCAGCAACGCCTTCAAAACATGGAACAGGCGATGGTTTTCAATACAGAACAGTCAACTGGTGTATCAGAAGCGACTAAAAGACGCTTTGACTGTAGTGGTGGAGGACTTGAGACTTTGCTCTGTGAAACCATGTGAGGACATTGAGAGGCGGTTCTGTTTTGAAGTGGTGTCACCTACAAAGAGCTGTATGCTGCAGGCTGAATCGGAGAAGCTCCGTCAAGCGTGGATTCAGGCGGTTCAGGCCAGCATTGCTTCTGCCTACAGGGAGATTTCTGAAAACTATTACATAGAGCGGCTGGACAGGACGGCGTCTCCCTCCACCAGCAGTATCGACTCTGCCAGCGAGCCGCGGGAGCGAGTGGTTCGAGGAGACAGTATCTTACAGCGGGTCCAATGTCTGCCCGGGAACGAGATCTGCTGTGACTGCGGTCAGAGTGACCCACGCTGGGCCAGCATCAACCTCGGCATCCTGCTCTGCATCGAGTGCTCTGGCATACACAGGAGTTTGGGTGTCCACTGCTCTAAAGTTCGCTCTTTAACACTCGACACATGGGAACCAGAGCTTATGAAGTTAATGTGTGAGCTTGGCAACACTGTGATCAACCAGATTTATGAAGGAGCATGCGAGGAACAAGGCCTGAAGAAACCGGGCCCTAACAGCTCAAGGCAGGAGAAAGAAGCGTGGATCAAAGCCAAATACGTGGAGAGGAAGTTTCTGAAGAAGATGTGCGGCTCCGAGGCGCTGCTGGAGGGAGGCCGAAAGTCACATCACTGGAGCGTGAAGAAGTGCAGGAGACACAACAGCTCCATCAGAGCCCCTAAAACACGCCGGAAATACAGACACGACGCTGCCATCATGTCTCCAGGAAATCTCTCCGCCGCTGCAGCAGCGGCAAAGTTTCGGAGGGAATCTCTGTTTTGTCCTGATGAGCTTGATTCGCTCTTCTCTTACTTTGACACTGGATCAGGGCCTCGCAGCCCCGCAGGTCTCAGCAGTGACAGTGGACTTGGCGGCAGCACTGATGGCAGCACTGACATACTCGTCTTCGGCTCTGTAGTGGACAGCGTCACTGAGGAAGAGTGTGAGGACTCTGATGAATCCAGTGGCGAGGTTGATATCGAGCAGGAAGCGTCAGATCCGGAGGACGGCCGAGAGCTTGACCCGAACACGCTGCTTCATAAAGCGTCACGAGCCCGAAACATGCCGGTCATGGCAGAAGCGCTTGCACACGGAGCAGACGTCAACTCTGTCAGTGAAGAGGACGAAAGCAAGAGTCCATTAATACAAGCCGTCACAGGGGGCTCTCTGATTGCCTGTGAGTTTCTGCTGCAGAACGGAGCAGATGTGAATCAAAGGGACATTCGAGGACGAGGACCTCTCCATCACGCCACATGTCTGGGTCATACAGGacaggtgtgtttgttcCTGAAGCGAGGAGCCGGTCAGATGGAGGTGGATGAGGATGGGCAGGACCCTCTCAGCATCGCTGTCCAGGCAGCAAACGCAGACATCGTCACATTATTGCGGTTAGCGCGGATGAACGAGGAGATGCGGGAGGCGGACGGGCCTTTAGGACAGCCAGACGCCAGTGTGCCTGTGAGTCCACTGAGGGTAAAGCGCAAGAGTTTACGAGCGTCTCCTCGTTCGCTGTCGTCTTTCGGCAGTTTCCGCACATGGCTTATTTACACTCCTCCAAAGCACTGACAGAGGAGACTCCATCAGGACACACACCTGCCGTGAAGACTGCCTGCACTGTTTTTACTATCTGAGAGTAATATATGAGAATGCTGAAATCTGATACCATCAATTGATTCgtttttatatttgatatttccCCTTGGGCTGAGATTTTAAGCttaaatttctgttttttttaattattattattattttaatttgttgctGAATGAATGAAGCATCTTTCCTAGTGTTTGTTTCCCGTGACAATTAAAGGGAGATTTATTCTG

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0045786 negative regulation of cell cycle biological_process
GO:0044770 cell cycle phase transition biological_process
GO:0044772 mitotic cell cycle phase transition biological_process
GO:0007049 cell cycle biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000278 mitotic cell cycle biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-070209-274 Predicted to enable GTPase activator activity and metal ion binding activity. Orthologous to human ACAP3 (ArfGAP with coiled-coil, ankyrin repeat and PH domains 3).

Ensembl:

ensembl_id ENSDARG00000099240

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008739 False 522 lncRNA 0.41 3 3385104 3494964
TCONS_00007378 True 2950 mRNA 0.51 25 3385106 3494964

Neighbor

gene id symbol gene type direction distance location
XLOC_003842 suox coding downstream 3761 3345405 ~ 3381343 (-)
XLOC_003841 tuba2 coding downstream 41641 3336524 ~ 3343463 (-)
XLOC_003840 prph coding downstream 50854 3320598 ~ 3334250 (-)
XLOC_003839 cdk2 coding downstream 76535 3301277 ~ 3308569 (-)
XLOC_003838 NA coding downstream 402722 2976603 ~ 2982382 (-)
XLOC_003844 ddx19 coding upstream 28394 3523358 ~ 3535581 (-)
XLOC_003845 CAMK2N1 coding upstream 55406 3550370 ~ 3552067 (-)
XLOC_003846 si:dkey-33m11.7 coding upstream 68127 3563091 ~ 3574311 (-)
XLOC_003847 dnajc16l coding upstream 98163 3593127 ~ 3613558 (-)
XLOC_003848 itih3a coding upstream 119362 3614326 ~ 3629216 (-)
XLOC_003938 BX324177.10 misc upstream 7843840 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 7872630 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 7875491 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 7885940 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 7888869 11383833 ~ 11384130 (-)
XLOC_003837 NA non-coding downstream 541221 2842098 ~ 2843883 (-)
XLOC_003835 NA non-coding downstream 624738 2756893 ~ 2760366 (-)
XLOC_003826 NA non-coding downstream 936590 2446641 ~ 2448514 (-)
XLOC_003825 NA non-coding downstream 1068891 2315496 ~ 2316213 (-)
XLOC_003853 CR450797.1 non-coding upstream 458759 3953723 ~ 3953837 (-)
XLOC_003858 BX248331.2 non-coding upstream 692058 4187022 ~ 4194697 (-)
XLOC_003860 NA non-coding upstream 769084 4264048 ~ 4281694 (-)
XLOC_003862 BX248331.4 non-coding upstream 791666 4286630 ~ 4290096 (-)
XLOC_003864 CT033790.2 non-coding upstream 804127 4299091 ~ 4302567 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000057_02258394_02291730 ACAP3B, CENB5, ACAP3 coding CI01000057 null 2258394 ~ 2291730 (-)