XLOC_003846 (si:dkey-33m11.7)


Basic Information

Item Value
gene id XLOC_003846
gene name si:dkey-33m11.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3563091 ~ 3574311 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007383
ctagttataagcTATTTTATATCTTTATGTTCCTCCACAGGTCTGGATTTTGTCCAGGGCCGGATTGTTGGTGGATATTCCCCATCGCCAAATTCAATCAAATACATAGTGTCATTGCAGAGCTCGAAGGGCCAGCACTTCTGTGGAGGATCACTGGTCCATAAGTACTGGGTGCTTACAGCTGCTCATTGCAATATTGGGATGGATCAGATGATGGTGGTGGCTGGAGATTATACTCTTGGTGCAAATGAGGGGACGGAGCAATACTCTAAACCTCTGATGCTCATCCCGCATCCGCTGTACAACAGGAGCACCAATAATGCAGATATTATGCTCATAAAGCTTAGTGCACCTATAGAGCTGAACAGGTATGTGTCCCTCGCACCGCTGCCCAAACAGAACACCGGTCTGCTGGCAGGACGAATGTGCCGGGTGTCAGGATGGGGCTCCACCAGCCACAGCGGAGGTCTGATCCCGCTTACCCTGCGCACTGTCAGACTCCCCATCGTCTCCACGTTTAAGTGCAACAGCAGCAGCTCCTTCAGCGGAAACATCACCGCTAATATGATCTGTGCCGGCTCCAGTACAGGAGGGAAAGATGCCTGTAAGGGTGACTCTGGAGGGCCGCTGGTGTGTGATGGACGTGTTTACGGTCTGGTCTCTTGGGGAAATGGATGTGGAGATCCTCGTTTTCCAGGGGTTTATACAGCCGTGTCCCGATTCCGCAGGTGGATTGACCAGACTATATACAGCACATATGCACGATGCCTTAAATCTGCTGGACTTTTTGGCAAAGACTAG
>TCONS_00007384
GAACGGTGTTGATGTGATTTGCTCAGGTTTGGTTGATATAGTCTATAGCCGACAGGCAGAAACGCTTCACTTGCTCACGTTAGCAATGGCCATGCTGCTGTTTCTGGTGCTGCTCAAACTCGTCCCAGCAAACTGTCTGGATTTTGTCCAGGGCCGGATTGTTGGTGGATATTCCCCATCGCCAAATTCAATCAAATACATAGTGTCATTGCAGAGCTCGAAGGGCCAGCACTTCTGTGGAGGATCACTGGTCCATAAGTACTGGGTGCTTACAGCTGCTCATTGCAATATTGGGATGGATCAGATGATGGTGGTGGCTGGAGATTATACTCTTGGTGCAAATGAGGGGACGGAGCAATACTCTAAACCTCTGATGCTCATCCCGCATCCGCTGTACAACAGGAGCACCAATAATGCAGATATTATGCTCATAAAGCTTAGTGCACCTATAGAGCTGAACAGGTATGTGTCCCTCGCACCGCTGCCCAAACAGAACACCGGTCTGCTGGCAGGACGAATGTGCCGGGTGTCAGGATGGGGCTCCACCAGCCACAGCGGAGGTCTGATCCCGCTTACCCTGCGCACTGTCAGACTCCCCATCGTCTCCACGTTTAAGTGCAACAGCAGCAGCTCCTTCAGCGGAAACATCACCGCTAATATGATCTGTGCCGGCTCCAGTACAGGAGGGAAAGATGCCTGTAAGGGTGACTCTGGAGGGCCGCTGGTGTGTGATGGACGTGTTTACGGTCTGGTCTCTTGGGGAAATGGATGTGGAGATCCTCGTTTTCCAGGGGTTTATACAGCCGTGTCCCG

Function

symbol description
si:dkey-33m11.7 Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in extracellular space.

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005615 extracellular space cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-115 Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in extracellular space.

Ensembl:

ensembl_id ENSDARG00000055011

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007383 False 801 mRNA 0.51 4 3563091 3571605
TCONS_00007384 True 813 mRNA 0.52 5 3563173 3574311

Neighbor

gene id symbol gene type direction distance location
XLOC_003845 CAMK2N1 coding downstream 11024 3550370 ~ 3552067 (-)
XLOC_003844 ddx19 coding downstream 27510 3523358 ~ 3535581 (-)
XLOC_003843 NA coding downstream 68127 3385104 ~ 3494964 (-)
XLOC_003842 suox coding downstream 181748 3345405 ~ 3381343 (-)
XLOC_003841 tuba2 coding downstream 219628 3336524 ~ 3343463 (-)
XLOC_003847 dnajc16l coding upstream 18816 3593127 ~ 3613558 (-)
XLOC_003848 itih3a coding upstream 40015 3614326 ~ 3629216 (-)
XLOC_003849 itih1 coding upstream 56316 3630627 ~ 3647014 (-)
XLOC_003850 gata2a coding upstream 273131 3847442 ~ 3865472 (-)
XLOC_003851 rpn1 coding upstream 318075 3892386 ~ 3907937 (-)
XLOC_003938 BX324177.10 misc upstream 7764493 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 7793283 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 7796144 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 7806593 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 7809522 11383833 ~ 11384130 (-)
XLOC_003838 NA non-coding downstream 580709 2976603 ~ 2982382 (-)
XLOC_003837 NA non-coding downstream 719208 2842098 ~ 2843883 (-)
XLOC_003835 NA non-coding downstream 802725 2756893 ~ 2760366 (-)
XLOC_003826 NA non-coding downstream 1114577 2446641 ~ 2448514 (-)
XLOC_003853 CR450797.1 non-coding upstream 379412 3953723 ~ 3953837 (-)
XLOC_003858 BX248331.2 non-coding upstream 612711 4187022 ~ 4194697 (-)
XLOC_003860 NA non-coding upstream 689737 4264048 ~ 4281694 (-)
XLOC_003862 BX248331.4 non-coding upstream 712319 4286630 ~ 4290096 (-)
XLOC_003864 CT033790.2 non-coding upstream 724780 4299091 ~ 4302567 (-)

Expression


Co-expression Network