XLOC_003849 (itih1)


Basic Information

Item Value
gene id XLOC_003849
gene name itih1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3630627 ~ 3647014 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007390
CAACACACACAGGCGCTCATtcatctgtctctctcttttcACTCTCATTTAAGAACATCAACAGAGCTGGAGTCAGTCTAAAGCCATTCAGGACCCAGATTTCACCATGTCTGCAGTGAAAGTCATGCTATGGATGTTTGtgttattttgcttgattttcaTTGCCAAAGCTCAAGTCACAATCAAAGATGACAGCAACAACTCTGCAAAACAGATTGAACTGCAAAGCATGCGAGTGGACTGCAAGGTTGCGTCTCGTTTTGCTCACACCGTCATGACCACCAGAGCACTGAACACAGCCAACGCATCGCAGGAAGTCTTCTTTGAGGTGGACTTACCCAAAACGGCCTTCATAACCAATTTTAGCATaGAGATCGAGAACAGGATATATGTAAGTGAGGTGAAGGAAAAAGAGCAGGCCAGGCAGAAGTATGAGAGCGCTGTGATATCCGGTCAAACTGCTGGCCTGGTTAAGGCTTCGGGAAGGCACATGGAGAAATTCTCGGTGTCGGTCAACATCGCAGCACAAAGCAGTGTCACATTCACTCTTACTTACGAAGAGCTGCTGCAGAGGCGTCTCGGCAGCTATGAGATCATGATAGGTGTCCGACCCAAACAGCTGGTTCAGAACTTTGAGATTGTGGTAGATATCTATGAACCTAAAGGAATCGCATTTCTGGACGTCAACGGAACATTCATCACCAATGAGCTGCTGCCTCTAGTAAAGAAAACAGTCACGGATAAAAAGGCACATGTGTACTTCTCACCAACACTGGATCAGCAGAAAAAATGCTCCAATTGTGAAGCAACGCTGATTGATGGAGATTTATTCATAAAGTATGACGTGAACCATGCACAAGATATAGGTGAAATACAGATAGTAAATGGCTACTTTGTGCACTTTTTTGCCCCCGAAGGTTTACCACAAATGCCTAAGAATGTGGTATTTGTGATAGACAGGAGTGGCTCTATGATGGGAGAGAAGATGAAACAGACTCAAGAAGCTCTGACGACAATACTAAGTGAACTGCATGAAGATGATTACTTTGGGCTGGTCACGTTTGATGACGTTATAGAGTCATGGAGACCATCCCTTAGCAAAGCTACACCTGAAAATGTGACAGAAGCAAAAGAGTATGTTCAGACTATTAATGCAAGATCTATGACTGATATTAACAAGGGAATTTTGTACGCGGTGGACATGCTTACCTCAGAAAAAAGTGCTTCTTTCCCAAACATGTCCATGATAATCCTTCTAACAGATGGACAACCCAGTTCTGGGGAGCAAGACCTGTCCAAAATCCAAGAAAATGTCCGAAATGCTATTAATGGAAGCATGAGTCTCTTTTGTTTGGGCTTTGGCTATGATTTGGACTACATTCTGCTCGATACGCTGGCCAAGCAGAATGATGGACTTGCTCGAAGAGTCTATGAGGCCTCAGACGCTGCGCTTCAACTACAGGGTTTTTATGAAGAAGTGGCTACTCCACTTCTCATAGAGGTTAATCTAAATTACCCTGACAACGCTGTAACAGACGTGACGCAAAGCCACTTTAGACATTTCTTCAAGGGCTCTGAGATAGTGGTAGCTGGACGCCTTCAAGAACTGGAGATCAATGCATTTCCGACTGAAGTATCTGCAAATGGGTTGGAAGACCAGTTTGTGATGCAGGGTGTAGCGATTGCTGAAGAGTGGGACAGTGTGTTCCCGGAGCAGGAGTACATCTTTGGAGATTTCATTGAGCGACTGTGGGCATATTTGACCATTCAGCAACTTCTGGATAAAAGAGAGAAATGTTCTCCAGAAGACAAGGAGAACACCACAGCTGAAGCTCTGAGCCTTTCGTTAAGGTATAACTTTGTCACACCGCTTACTTCCATGGTGGTCACCAAACCACAAACTGACGATGAAGAAACACTCGTTGCTGACAAGCTGACTGAAGAGCAGCGTGAGGACATACCACAAGCTGGCATGAGAGCTCCATCTCAGCTGACTGGCACTTCTCAACGTCTCAGACAATATTCTCAAGTTCCACTTTTCGGTGGCACTGCTTCCCAAAGAAGGTTAACACCTTCATCTTTAGTTGACGGAGATCCACATTTCATCATTGAGCTGCCAGATCAGAATGATGCTCTGTGCTTCAACATTGATGACAAACCTGGAACCATCTTCAATCTGGTTAGAGACCCGCTTACAGGCATCATGGTGAATGGCCAGATCATCGGAGATAAGAAGATCATCCCAGGGAGCAAGTTGCACACTTATTTTGGCCGCTTTGGGATTGTTGATGAGAAATTGGGTATCAGACTGATGGTGAGCACACAGGAGATCTGGGTGTCCGAAGGAGGAAAACAGACTAAACTCTCCTGGACGAACAAGAGGACAATAAAAGGACTCGATATGGACCTGCAGGTGATCAAAGATCAAAGTTTAACAGTGACCCTAAAGAACTCAGTCAAGTTTCTTATTATCCTGCACAAAATATGGCGGAAACATCCATATCATCAAGACTACCTTGGGTTCTACACCTTGGACAGTCACCAACTTTCGCAAGATGTCCATGGCCTTCTTGGTCAATTCTACCACGGCATAAACTTTGAGGTCAGTGACTTATTTCCAGGAAAGGACGCTGATAAACAAGATGCCGTTATGTTTGTGAAAAGAAACAAGCTCACAGTTACCAGGGGCTGGAAGAGAGATTTCAGACAGGATGTGAAGAATGGAGACGACGTGCCCTGCTGGTTCATTCACAACAATGGCACCGGACTCATCGATGGAGTTCACACGGACTACATCGTCTCTGGACTCTTCAAGACAATATAGGCAAAATCTGTCTTTTAACTGACCTTTGCActatacagtaattaactgttaGATTTTATGTAGTCTTAAGTATGTAATATGTGATGGTTGTTGTTTGGATGTATTGCAGAATCTGACAAAGCTCTATTACAAAGCTGTTTTTGATAGGATTTAAAGCCATTCAGTAGCTACGAAATAAACCACCTACACAAACATGC
>TCONS_00007391
atgtcttCTAAGAAAAATGCTGACGGGTTCATTACTGATTTTCCCTACTGTATACTATTGACTGGTTCATATTTGAATGGTAATCTAGAAAATTATTTAGTTGGCCATAATTGGTCATTAAATGTGAATTCTATTGAACTGCAAAGCATGCGAGTGGACTGCAAGGTTGCGTCTCGTTTTGCTCACACCGTCATGACCACCAGAGCACTGAACACAGCCAACGCATCGCAGGAAGTCTTCTTTGAGGTGGACTTACCCAAAACGGCCTTCATAACCAATTTTAGCATGTTAATCGAGAACAGGATATATGTAAGTGAGGTGAAGGAAAAAGAGCAGGCCAGGCAGAAGTATGAGAGCGCTGTGATATCCGGTCAAACTGCTGGCCTGGTTAAGGCTTCGGGAAGGCACATGGAGAAATTCTCGGTGTCGGTCAACATCGCAGCACAAAGCAGTGTCACATTCACTCTTACTTACGAAGAGCTGCTGCAGAGGCGTCTCGGCAGCTATGAGATCATGATAGGTGTCCGACCCAAACAGCTGGTTCAGAACTTTGAGATTGTGGTAGATATCTATGAACCTAAAGGAATCGCATTTCTGGACGTCAACGGAACATTCATCACCAATGAGCTGCTGCCTCTAGTAAAGAAAACAGTCACGGATAAAAAGGCACATGTGTACTTCTCACCAACACTGGATCAGCAGAAAAAATGCTCCAATTGTGAAGCAACGCTGATTGATGGAGATTTATTCATAAAGTATGACGTGAACCATagtccagacaacctacaacaaATAGTAAATGGCTACTTTGTGCACTTTTTTGCCCCCGAAGGTTTACCACAAATGCCTAAGAATGTGGTATTTGTGATAGACAGGAGTGGCTCTATGATGGGAGAGAAGATGAAACAGACTCAAGAAGCTCTGACGACAATACTAAGTGAACTGCATGAAGATGATTACTTTGGGCTGGTCACGTTTGATGACGTTATAGAGTCATGGAGACCATCCCTTAGCAAAGCTACACCTGAAAATGTGACAGAAGCAAAAGAGTATGTTCAGACTATTAATGCAAGATCTATGACTGATATTAACAAGGGAATTTTGTACGCGGTGGACATGCTTACCTCAGAAAAAAGTGCTTCTTTCCCAAACATGTCCATGATAATCCTTCTAACAGATGGACAACCCAGTTCTGGGGAGCAAGACCTGTCCAAAATCCAAGAAAATGTCCGAAATGCTATTAATGGAAGCATGAGTCTCTTTTGTTTGGGCTTTGGCTATGATTTGGACTACATTCTGCTCGATACGCTGGCCAAGCAGAATGATGGACTTGCTCGAAGAGTCTATGAGGCCTCAGACGCTGCGCTTCAACTACAGGGTTTTTATGAAGAAGTGGCTACTCCACTTCTCATAGAGGTTAATCTAAATTACCCTGACAACGCTGTAACAGACGTGACGCAAAGCCACTTTAGACATTTCTTCAAGGGCTCTGAGATAGTGGTAGCTGGACGCCTTCAAGAACTGGAGATCAATGCATTTCCGACTGAAGTATCTGGTGTAGCGATTGCTGAAGAGTGGGACAGTGTGTTCCCGGAGCAGGAGTACATCTTTGGAGATTTCATTGAGCGACTGTGGGCATATTTGACCATTCAGCAACTTCTGGATAAAAGAGAGAAATGTTCTCCAGAAGACAAGGAGAACACCACAGCTGAAGCTCTGAGCCTTTCGTTAAGGTATAACTTTGTCACACCGCTTACTTCCATGGTGGTCACCAAACCACAAACTGACGATGAAGAAACACTCGTTGCTGACAAGCTGACTGAAGGTATTAGTCTTTTTTTGAACTTTAAAGGTAGAGTCTGTTCAATAATGAAGACTCTAAAAACTTTTACCTGTTGTTCTCTGGATTTCGCAGTTGACGGAGATCCACATTTCATCATTGAGCTGCCAGATCAGAATGATGCTCTGTGCTTCAACATTGATGACAAACCTGGAACCATCTTCAATCTGGTTAGAGACCCGCTTACAGGCATCATGGTGAATGGCCAGATCATCGGAGATAAGAAGATCATCCCAGGGAGCAAGTTGCACACTTATTTTGGCCGCTTTGGGATTGTTGATGAGAAATTGGGTATCAGACTGATGGTGAGCACACAGGAGATCTGGGTGTCCGAAGGAGGAAAACAGACTAAACTCTCCTGGACGAACAAGAGGACAATAAAAGGACTCGAGTATGTGCCAGTTATATTAGACATGACCCTAAAGAACTCAGTCAAGTTTCTTATTATCCTGCACAAAATATGGCGGAAACATCCATATCATCAAGACTACCTTGGGTTCTACACCTTGGACAGTCACCAACTTTCGCAAGATGTCCATGGCCTTCTTGGTCAATTCTACCACGGCATAAACTTTGAGGTCAGTGACTTATTTCCAGGAAAGGACGCTGATAAACAAGATGCCGTTATGTTTGTGAAAAGAAACAAGCTCACAGTTACCAGGGGCTGGAAGAGAGATTTCAGACAGGATGTGAAGAATGGAGACGACGTGCCCTGCTGGTTCATTCACAACAATGGCACCGGACTCATCGATGGAGTTCACACGGACTACATCGTCTCTGGACTCTTCAAGACAATATAG

Function

symbol description
itih1 Predicted to enable calcium ion binding activity. Predicted to be involved in hyaluronan metabolic process and negative regulation of endopeptidase activity. Predicted to act upstream of or within extracellular matrix organization. Located in blood microparticle and extracellular exosome. Part of collagen-containing extracellular matrix.

GO: NA

KEGG:

id description
ko00536 Glycosaminoglycan binding proteins

Ensembl:

ensembl_id ENSDARG00000055053

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007390 False 3021 mRNA 0.44 21 3630627 3646793
TCONS_00007391 True 2640 mRNA 0.44 19 3630824 3647014

Neighbor

gene id symbol gene type direction distance location
XLOC_003848 itih3a coding downstream 1411 3614326 ~ 3629216 (-)
XLOC_003847 dnajc16l coding downstream 17069 3593127 ~ 3613558 (-)
XLOC_003846 si:dkey-33m11.7 coding downstream 56316 3563091 ~ 3574311 (-)
XLOC_003845 CAMK2N1 coding downstream 78560 3550370 ~ 3552067 (-)
XLOC_003844 ddx19 coding downstream 95046 3523358 ~ 3535581 (-)
XLOC_003850 gata2a coding upstream 200428 3847442 ~ 3865472 (-)
XLOC_003851 rpn1 coding upstream 245372 3892386 ~ 3907937 (-)
XLOC_003852 pbrm1 coding upstream 262742 3909756 ~ 3959889 (-)
XLOC_003853 CR450797.1 coding upstream 306709 3953723 ~ 3953837 (-)
XLOC_003854 glt8d1 coding upstream 324702 3971716 ~ 3987885 (-)
XLOC_003938 BX324177.10 misc upstream 7691790 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 7720580 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 7723441 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 7733890 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 7736819 11383833 ~ 11384130 (-)
XLOC_003843 NA non-coding downstream 135663 3385104 ~ 3494964 (-)
XLOC_003838 NA non-coding downstream 648245 2976603 ~ 2982382 (-)
XLOC_003837 NA non-coding downstream 786744 2842098 ~ 2843883 (-)
XLOC_003835 NA non-coding downstream 870261 2756893 ~ 2760366 (-)
XLOC_003826 NA non-coding downstream 1182113 2446641 ~ 2448514 (-)
XLOC_003858 BX248331.2 non-coding upstream 540008 4187022 ~ 4194697 (-)
XLOC_003860 NA non-coding upstream 617034 4264048 ~ 4281694 (-)
XLOC_003862 BX248331.4 non-coding upstream 639616 4286630 ~ 4290096 (-)
XLOC_003864 CT033790.2 non-coding upstream 652077 4299091 ~ 4302567 (-)

Expression


Co-expression Network