RNA id: TCONS_00007390


Basic Information

Item Value
RNA id TCONS_00007390
length 3021
RNA type mRNA
GC content 0.44
exon number 21
gene id XLOC_003849
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3630627 ~ 3647014 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAACACACACAGGCGCTCATtcatctgtctctctcttttcACTCTCATTTAAGAACATCAACAGAGCTGGAGTCAGTCTAAAGCCATTCAGGACCCAGATTTCACCATGTCTGCAGTGAAAGTCATGCTATGGATGTTTGtgttattttgcttgattttcaTTGCCAAAGCTCAAGTCACAATCAAAGATGACAGCAACAACTCTGCAAAACAGATTGAACTGCAAAGCATGCGAGTGGACTGCAAGGTTGCGTCTCGTTTTGCTCACACCGTCATGACCACCAGAGCACTGAACACAGCCAACGCATCGCAGGAAGTCTTCTTTGAGGTGGACTTACCCAAAACGGCCTTCATAACCAATTTTAGCATaGAGATCGAGAACAGGATATATGTAAGTGAGGTGAAGGAAAAAGAGCAGGCCAGGCAGAAGTATGAGAGCGCTGTGATATCCGGTCAAACTGCTGGCCTGGTTAAGGCTTCGGGAAGGCACATGGAGAAATTCTCGGTGTCGGTCAACATCGCAGCACAAAGCAGTGTCACATTCACTCTTACTTACGAAGAGCTGCTGCAGAGGCGTCTCGGCAGCTATGAGATCATGATAGGTGTCCGACCCAAACAGCTGGTTCAGAACTTTGAGATTGTGGTAGATATCTATGAACCTAAAGGAATCGCATTTCTGGACGTCAACGGAACATTCATCACCAATGAGCTGCTGCCTCTAGTAAAGAAAACAGTCACGGATAAAAAGGCACATGTGTACTTCTCACCAACACTGGATCAGCAGAAAAAATGCTCCAATTGTGAAGCAACGCTGATTGATGGAGATTTATTCATAAAGTATGACGTGAACCATGCACAAGATATAGGTGAAATACAGATAGTAAATGGCTACTTTGTGCACTTTTTTGCCCCCGAAGGTTTACCACAAATGCCTAAGAATGTGGTATTTGTGATAGACAGGAGTGGCTCTATGATGGGAGAGAAGATGAAACAGACTCAAGAAGCTCTGACGACAATACTAAGTGAACTGCATGAAGATGATTACTTTGGGCTGGTCACGTTTGATGACGTTATAGAGTCATGGAGACCATCCCTTAGCAAAGCTACACCTGAAAATGTGACAGAAGCAAAAGAGTATGTTCAGACTATTAATGCAAGATCTATGACTGATATTAACAAGGGAATTTTGTACGCGGTGGACATGCTTACCTCAGAAAAAAGTGCTTCTTTCCCAAACATGTCCATGATAATCCTTCTAACAGATGGACAACCCAGTTCTGGGGAGCAAGACCTGTCCAAAATCCAAGAAAATGTCCGAAATGCTATTAATGGAAGCATGAGTCTCTTTTGTTTGGGCTTTGGCTATGATTTGGACTACATTCTGCTCGATACGCTGGCCAAGCAGAATGATGGACTTGCTCGAAGAGTCTATGAGGCCTCAGACGCTGCGCTTCAACTACAGGGTTTTTATGAAGAAGTGGCTACTCCACTTCTCATAGAGGTTAATCTAAATTACCCTGACAACGCTGTAACAGACGTGACGCAAAGCCACTTTAGACATTTCTTCAAGGGCTCTGAGATAGTGGTAGCTGGACGCCTTCAAGAACTGGAGATCAATGCATTTCCGACTGAAGTATCTGCAAATGGGTTGGAAGACCAGTTTGTGATGCAGGGTGTAGCGATTGCTGAAGAGTGGGACAGTGTGTTCCCGGAGCAGGAGTACATCTTTGGAGATTTCATTGAGCGACTGTGGGCATATTTGACCATTCAGCAACTTCTGGATAAAAGAGAGAAATGTTCTCCAGAAGACAAGGAGAACACCACAGCTGAAGCTCTGAGCCTTTCGTTAAGGTATAACTTTGTCACACCGCTTACTTCCATGGTGGTCACCAAACCACAAACTGACGATGAAGAAACACTCGTTGCTGACAAGCTGACTGAAGAGCAGCGTGAGGACATACCACAAGCTGGCATGAGAGCTCCATCTCAGCTGACTGGCACTTCTCAACGTCTCAGACAATATTCTCAAGTTCCACTTTTCGGTGGCACTGCTTCCCAAAGAAGGTTAACACCTTCATCTTTAGTTGACGGAGATCCACATTTCATCATTGAGCTGCCAGATCAGAATGATGCTCTGTGCTTCAACATTGATGACAAACCTGGAACCATCTTCAATCTGGTTAGAGACCCGCTTACAGGCATCATGGTGAATGGCCAGATCATCGGAGATAAGAAGATCATCCCAGGGAGCAAGTTGCACACTTATTTTGGCCGCTTTGGGATTGTTGATGAGAAATTGGGTATCAGACTGATGGTGAGCACACAGGAGATCTGGGTGTCCGAAGGAGGAAAACAGACTAAACTCTCCTGGACGAACAAGAGGACAATAAAAGGACTCGATATGGACCTGCAGGTGATCAAAGATCAAAGTTTAACAGTGACCCTAAAGAACTCAGTCAAGTTTCTTATTATCCTGCACAAAATATGGCGGAAACATCCATATCATCAAGACTACCTTGGGTTCTACACCTTGGACAGTCACCAACTTTCGCAAGATGTCCATGGCCTTCTTGGTCAATTCTACCACGGCATAAACTTTGAGGTCAGTGACTTATTTCCAGGAAAGGACGCTGATAAACAAGATGCCGTTATGTTTGTGAAAAGAAACAAGCTCACAGTTACCAGGGGCTGGAAGAGAGATTTCAGACAGGATGTGAAGAATGGAGACGACGTGCCCTGCTGGTTCATTCACAACAATGGCACCGGACTCATCGATGGAGTTCACACGGACTACATCGTCTCTGGACTCTTCAAGACAATATAGGCAAAATCTGTCTTTTAACTGACCTTTGCActatacagtaattaactgttaGATTTTATGTAGTCTTAAGTATGTAATATGTGATGGTTGTTGTTTGGATGTATTGCAGAATCTGACAAAGCTCTATTACAAAGCTGTTTTTGATAGGATTTAAAGCCATTCAGTAGCTACGAAATAAACCACCTACACAAACATGC

Function

GO: NA

KEGG:

id description
ko00536 Glycosaminoglycan binding proteins

Ensembl:

ensembl_id ENSDART00000077344

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007389 lncRNA downstream 1439 3625121 ~ 3629188 (-) True XLOC_003848
TCONS_00007386 lncRNA downstream 25800 3602180 ~ 3604827 (-) True XLOC_003847
TCONS_00008740 lncRNA downstream 78560 3550371 ~ 3552067 (-) True XLOC_003845
TCONS_00008739 lncRNA downstream 135663 3385104 ~ 3494964 (-) False XLOC_003843
TCONS_00007377 lncRNA downstream 258600 3370355 ~ 3372027 (-) True XLOC_003842
TCONS_00007402 lncRNA upstream 328150 3974943 ~ 3984481 (-) False XLOC_003854
TCONS_00007403 lncRNA upstream 337202 3983995 ~ 3987809 (-) True XLOC_003854
TCONS_00008741 lncRNA upstream 481504 4128297 ~ 4132814 (-) True XLOC_003856
TCONS_00007408 lncRNA upstream 540229 4187022 ~ 4194697 (-) True XLOC_003858
TCONS_00008444 lncRNA upstream 617255 4264048 ~ 4281694 (-) True XLOC_003860
TCONS_00007387 mRNA downstream 1411 3614326 ~ 3629216 (-) False XLOC_003848
TCONS_00007388 mRNA downstream 1426 3623856 ~ 3629201 (-) False XLOC_003848
TCONS_00007385 mRNA downstream 17069 3593127 ~ 3613558 (-) False XLOC_003847
TCONS_00007384 mRNA downstream 56316 3563173 ~ 3574311 (-) True XLOC_003846
TCONS_00007383 mRNA downstream 59022 3563091 ~ 3571605 (-) False XLOC_003846
TCONS_00007392 mRNA upstream 200649 3847442 ~ 3860199 (-) False XLOC_003850
TCONS_00007393 mRNA upstream 201090 3847883 ~ 3860534 (-) False XLOC_003850
TCONS_00007394 mRNA upstream 211577 3858370 ~ 3865472 (-) True XLOC_003850
TCONS_00007395 mRNA upstream 245593 3892386 ~ 3897067 (-) False XLOC_003851
TCONS_00007396 mRNA upstream 246474 3893267 ~ 3907937 (-) True XLOC_003851
TCONS_00007330 other downstream 2542112 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 2650879 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 3170697 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 3278926 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 306930 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 2425167 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 2550483 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 3133915 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 3297507 6944300 ~ 6948018 (-) False XLOC_003898

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_02457005_02470094.mRNA True 2365 mRNA 0.43 15 CI01000057 2456813 ~ 2470094 (-)