Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00007402 |
| length | 700 |
| lncRNA type | retained_intron |
| GC content | 0.45 |
| exon number | 5 |
| gene id | XLOC_003854 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 3971716 ~ 3987885 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0016757 | transferase activity, transferring glycosyl groups | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-041114-23 | Predicted to enable hexosyltransferase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human GLT8D1 (glycosyltransferase 8 domain containing 1). |
| ensembl_id | ENSDART00000170651 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00007389 | lncRNA | downstream | 345755 | 3625121 ~ 3629188 (-) | True | XLOC_003848 |
| TCONS_00007386 | lncRNA | downstream | 370116 | 3602180 ~ 3604827 (-) | True | XLOC_003847 |
| TCONS_00008740 | lncRNA | downstream | 422876 | 3550371 ~ 3552067 (-) | True | XLOC_003845 |
| TCONS_00008739 | lncRNA | downstream | 479979 | 3385104 ~ 3494964 (-) | False | XLOC_003843 |
| TCONS_00007377 | lncRNA | downstream | 602916 | 3370355 ~ 3372027 (-) | True | XLOC_003842 |
| TCONS_00008741 | lncRNA | upstream | 143816 | 4128297 ~ 4132814 (-) | True | XLOC_003856 |
| TCONS_00007408 | lncRNA | upstream | 202541 | 4187022 ~ 4194697 (-) | True | XLOC_003858 |
| TCONS_00008444 | lncRNA | upstream | 279567 | 4264048 ~ 4281694 (-) | True | XLOC_003860 |
| TCONS_00007412 | lncRNA | upstream | 302149 | 4286630 ~ 4290096 (-) | True | XLOC_003862 |
| TCONS_00007421 | lncRNA | upstream | 314610 | 4299091 ~ 4302567 (-) | True | XLOC_003864 |
| TCONS_00007398 | mRNA | downstream | 15054 | 3909756 ~ 3959889 (-) | False | XLOC_003852 |
| TCONS_00007397 | mRNA | downstream | 15466 | 3909756 ~ 3959477 (-) | False | XLOC_003852 |
| TCONS_00007399 | mRNA | downstream | 20252 | 3910172 ~ 3954691 (-) | True | XLOC_003852 |
| TCONS_00007396 | mRNA | downstream | 67006 | 3893267 ~ 3907937 (-) | True | XLOC_003851 |
| TCONS_00007395 | mRNA | downstream | 77876 | 3892386 ~ 3897067 (-) | False | XLOC_003851 |
| TCONS_00007404 | mRNA | upstream | 7430 | 3991911 ~ 4024087 (-) | False | XLOC_003855 |
| TCONS_00007405 | mRNA | upstream | 10266 | 3994747 ~ 4023940 (-) | True | XLOC_003855 |
| TCONS_00007406 | mRNA | upstream | 53559 | 4038040 ~ 4137242 (-) | False | XLOC_003856 |
| TCONS_00007407 | mRNA | upstream | 164327 | 4148808 ~ 4175773 (-) | True | XLOC_003857 |
| TCONS_00007409 | mRNA | upstream | 221086 | 4205567 ~ 4235811 (-) | False | XLOC_003859 |
| TCONS_00007400 | other | downstream | 21106 | 3953723 ~ 3953837 (-) | True | XLOC_003853 |
| TCONS_00007330 | other | downstream | 2886428 | 1069406 ~ 1088515 (-) | False | XLOC_003806 |
| TCONS_00007326 | other | downstream | 2995195 | 923795 ~ 979748 (-) | True | XLOC_003803 |
| TCONS_00007304 | other | downstream | 3515013 | 459815 ~ 459930 (-) | True | XLOC_003793 |
| TCONS_00007296 | other | downstream | 3623242 | 349113 ~ 351701 (-) | True | XLOC_003787 |
| TCONS_00007438 | other | upstream | 2087479 | 6071960 ~ 6072066 (-) | True | XLOC_003881 |
| TCONS_00007441 | other | upstream | 2212795 | 6197276 ~ 6206589 (-) | False | XLOC_003884 |
| TCONS_00007456 | other | upstream | 2796227 | 6780708 ~ 6782076 (-) | True | XLOC_003894 |
| TCONS_00007463 | other | upstream | 2959819 | 6944300 ~ 6948018 (-) | False | XLOC_003898 |
| TCONS_00007477 | other | upstream | 3131766 | 7116247 ~ 7116363 (-) | True | XLOC_003904 |
