RNA id: TCONS_00007405


Basic Information

Item Value
RNA id TCONS_00007405
length 3003
RNA type mRNA
GC content 0.48
exon number 16
gene id XLOC_003855
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3991911 ~ 4024087 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCAAAACAAGTTTGAAAAACAAATCACCGTCGTTACATTGAGAAGAAGTCATTTAACTACTGCACACTGAAAAAAACCTCTCGCTATGTGATACAGGCAGCATCTCTGGGAGGAGGATCATGGACGGATATTTATTCGTCAGAGTTGTGGGGAAGGGGAGCTACGGGGAAGTCAACCTGGTCCGACACAAATCCGACCGTAAACAGTATGTGATCAAGAAGCTGAACCTGAGGACGTCCTCCAGACGTGAACGGCGAGCAGCGGAGCAGGAGGCGCAGCTCCTTTCCCAGCTTAAACATCCCAACATCGTCATGTACCGGGAATCATGGGAAGGCGAGGACTGTCAGCTGTACATCGTGATGGGCTTCTGTGAGGGAGGAGATCTGTACCACAGACTCAAACAGCAGAAAGGAGAGCTGCTGCCTGAGAGACAGGTGGTGGAGTGGTTTGTTCAGATCGCCATGGCTCTTCAGTATTTACACGAGAAGCACATTTTACATCGAGATCTGAAAACGCAGAATATCTTCTTGACCAAGACCAACATAATCAAGGTGGGCGATCTGGGCATCGCACGAGTCTTGGAGAATCAGAACGATATGGCCAGCACTCTGATCGGCACACCGTACTACATGAGTCCGGAGCTGTTCTCCAACAAGCCGTACAACTACAAGtCGGACGTGTGGGCGCTGGGATGTTGTGTGTATGAGATGGCAACCCTAAAGCATGCCTTCAATGCAAAGGACATGAACTCACTTGTGTATCGGATCGTAGAAGGAAAGTTACCACAGATGCCAAGTAAGTACGACCCTCAGCTGGGAGAACTGATAAAGCGCATGCTGTGTAAGAAGCCAGAGGACAGACCAGATGTCAAACACATCCTCCGACAGCCATATATTAAACATCAGATCTCCATGTTCTTGGAGGCCACTAAAGAGAAAACCGCCAAGTCACGGAAAAATGCAGCGAATGGCAAACTGAACAGTGCTGGATCAGATGCGTCTACCAAACCAAATCAGGTAGTTCAGCCACAGTGTCTCAACTCTGAGTCAAAGACCTGCGGAAAAAAGGCTGAAGAAATATATTTGAACCGACAAAAACCCTGTAATGGTGCCTGGGAAAATGTGGCTCCTAAACATCACATGCCCCCCAAATCTCCTACACAAGACATTCATAACTCAACAGGCCAATCTATAGCCACTATTAGCAATATAGACATTGaaatacagaaacagagaaaAGCCAAACCACCAAAACCCAGCAGCCACCAGAACAACAACCTGCCATCTGTGAGCAAGAGGAGAGAGAAAGAAGACCCCGGTGCTCCTCAAACACACCCTCACAAACAAGTGTCTGGTGTCGGCGGGACGGAGGATAAGATGTCAGCGAATGCAAGTTCAATAACACCCAAACATGCAGATGGAACCAAGATGCCAAACAAGAGTAAGGCTCTTGATGTAAGTTTGGACCTTAAAGACGACACCATGAAGCTCCTGCAGGAGGCAGGGGTGCAGGACCTCCCATACGAGCCCACTGAGCTACATCACAATGCGGAGCAAAAGACCGAGAGCCAAAGAACAGCTGATAATCAGAGCAACGCTGGTGTCCTGAAGGATGCTCCTACTGGAAGTTCAACCGAGGAGAGTGAGGGAAGTTTAGATTCCACAGAGAAACTACTCAAGCCTGTTCCTGTAATATTTATGGAGCCGTCCCGTTCAGAGTCGCCTGCAGCTCTATCAGATGAAGGCAGGCCCTCGTCCTCGTCTTCTGAACCCTCCATGTCCCGTCAGCGCAGGCAGAGGAGAAAAGACAAGTCCCAGGACCTGCAGAACGGCATACAAGAGAAAGTGTCCAGACCTCTGCCTCCTCTCCCCGAAGATGGAAACAGTGCACAGAAAGACCAGAGCACACCAGCCAATCTCTCGTCCACTAACAAGAGCACAGACCAGCAGAATCGTCCACTGTCAGCCAGAGAGAGGAGAAGACTGAAGCAGTCGCAGGAGAACTCCACACAACAAGTCGTGTCCGCTGTCAAAAGGCCATCTTGTGATGTGCCCTCATTAGACAGTGAGCAGATACACCAGACTGACTGTCCGAGAGCTGCTAGAACAACAGTGGACACAACAAAGGAGAGGAAGTCCTCAAGGAGACAGTCTGATGAAGACGAGTGCAGTTCCTCCACCAGCTCCACTGAACGCTCAGAGGGAGACTATAGAGAACGAAAGTGTGAGAGCAATGAGATGCAAGACTTGGTGCAGATGATGACGCAGACGTTACACATGGATGGTAGAGATGCATTATTTGAGCCTGACGGACCCAGATGTCACTCCACTCCGCTGCCAGAGTTCAAACTCAATAGGAAATACCGAGACACGCTGATGCTTCATGGGAAATCCAGAGAGGCGCAGGGAGATTTACAAATCACCGGCTTCCCTTTAGatgacaGCACGGGTCCTGCAAAGGTCAGGAGGGTGATTGAACACTTGCGCACTGATGTTCTGAAAGGACTCGGGGTGAAGCTGCTGGACCGAGCGCTGGACATCATGCAGGAGGAGGACGAGGACAAGAGAGAGCTTTTGCTGCAGGAGCAAATGGGTGATGACAAATACAAGCAGTTCGCAGTGAAAGTGCGGCAGCTGAAGTTCTTTGAGGACGTCGCTTTTAAAGACTGAGCCGCTCCACAAACACTGATAAGCAATTATTACTGAtgagcagaaaacacacacacacacttcactgaaGCCTCCTATCAACAATCACTGTTACCGTTGAATGCTTTTGTAAATGTATAGTGATGATAGAACACTAGATATGCAATGAAGCTGTTATTGCGCACCTTTATAGTCATCTAGGGGGATGTGAATCTATGCTGTGTAGAATCTTGAATTTTGAAAGAGACGTTGAGAATAGTTTTCCCTTTTCCTATTTTCTGGACTGCGTATTTATATTGCGAATAATGTAAATCAATGaggaatttataataaaatatcttTTTAGGAAACTCTT

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1392 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human NEK4 (NIMA related kinase 4).

Ensembl:

ensembl_id ENSDART00000058728

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007403 lncRNA downstream 6938 3983995 ~ 3987809 (-) True XLOC_003854
TCONS_00007402 lncRNA downstream 10266 3974943 ~ 3984481 (-) False XLOC_003854
TCONS_00007389 lncRNA downstream 365559 3625121 ~ 3629188 (-) True XLOC_003848
TCONS_00007386 lncRNA downstream 389920 3602180 ~ 3604827 (-) True XLOC_003847
TCONS_00008740 lncRNA downstream 442680 3550371 ~ 3552067 (-) True XLOC_003845
TCONS_00008741 lncRNA upstream 104357 4128297 ~ 4132814 (-) True XLOC_003856
TCONS_00007408 lncRNA upstream 163082 4187022 ~ 4194697 (-) True XLOC_003858
TCONS_00008444 lncRNA upstream 240108 4264048 ~ 4281694 (-) True XLOC_003860
TCONS_00007412 lncRNA upstream 262690 4286630 ~ 4290096 (-) True XLOC_003862
TCONS_00007421 lncRNA upstream 275151 4299091 ~ 4302567 (-) True XLOC_003864
TCONS_00007401 mRNA downstream 6862 3971716 ~ 3987885 (-) False XLOC_003854
TCONS_00007398 mRNA downstream 34858 3909756 ~ 3959889 (-) False XLOC_003852
TCONS_00007397 mRNA downstream 35270 3909756 ~ 3959477 (-) False XLOC_003852
TCONS_00007399 mRNA downstream 40056 3910172 ~ 3954691 (-) True XLOC_003852
TCONS_00007396 mRNA downstream 86810 3893267 ~ 3907937 (-) True XLOC_003851
TCONS_00007406 mRNA upstream 14100 4038040 ~ 4137242 (-) False XLOC_003856
TCONS_00007407 mRNA upstream 124868 4148808 ~ 4175773 (-) True XLOC_003857
TCONS_00007409 mRNA upstream 181627 4205567 ~ 4235811 (-) False XLOC_003859
TCONS_00007410 mRNA upstream 181956 4205896 ~ 4220167 (-) True XLOC_003859
TCONS_00007411 mRNA upstream 259074 4283014 ~ 4286010 (-) True XLOC_003861
TCONS_00007400 other downstream 40910 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007330 other downstream 2906232 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 3014999 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 3534817 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 3643046 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007438 other upstream 2048020 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 2173336 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 2756768 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 2920360 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007477 other upstream 3092307 7116247 ~ 7116363 (-) True XLOC_003904

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00017166 True 2178 mRNA 0.48 13 CM030122.1 49360827 ~ 49368839 (+)