XLOC_003855 (nek4)


Basic Information

Item Value
gene id XLOC_003855
gene name nek4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3991911 ~ 4024087 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007404
gcagctgtatcccttctaccAGCAACCCTATAGAGGACGCTGTGTTCAAACCGAGCACACATTAGGCCGGAACTTGTAGCGTTAAATCCTGTCAGTTGCCTGGTGACGCCGAAGCTCCTCTCGCCAGTTTCCTGTGCCTTGTATCACCCAAAACAAGTTTGAAAAACAAATCACCGTCGTTACATTGAGAAGAAGTCATTTAACTACTGCACACTGAAAAAAACCTCTCGCTATGTGATACAGGCAGCATCTCTGGGAGGAGGATCATGGACGGATATTTATTCGTCAGAGTTGTGGGGAAGGGGAGCTACGGGGAAGTCAACCTGGTCCGACACAAATCCGACCGTAAACAGTATGTGATCAAGAAGCTGAACCTGAGGACGTCCTCCAGACGTGAACGGCGAGCAGCGGAGCAGGAGGCGCAGCTCCTTTCCCAGCTTAAACATCCCAACATCGTCATGTACCGGGAATCATGGGAAGGCGAGGACTGTCAGCTGTACATCGTGATGGGCTTCTGTGAGGGAGGAGATCTGTACCACAGACTCAAACAGCAGAAAGGAGAGCTGCTGCCTGAGAGACAGGTGGTGGAGTGGTTTGTTCAGATCGCCATGGCTCTTCAGTATTTACACGAGAAGCACATTTTACATCGAGATCTGAAAACGCAGAATATCTTCTTGACCAAGACCAACATAATCAAGGTGGGCGATCTGGGCATCGCACGAGTCTTGGAGAATCAGAACGATATGGCCAGCACTCTGATCGGCACACCGTACTACATGAGTCCGGAGCTGTTCTCCAACAAGCCGTACAACTACAAGtCGGACGTGTGGGCGCTGGGATGTTGTGTGTATGAGATGGCAACCCTAAAGCATGCCTTCAATGCAAAGGACATGAACTCACTTGTGTATCGGATCGTAGAAGGAAAGTTACCACAGATGCCAAGTAAGTACGACCCTCAGCTGGGAGAACTGATAAAGCGCATGCTGTGTAAGAAGCCAGAGGACAGACCAGATGTCAAACACATCCTCCGACAGCCATATATTAAACATCAGATCTCCATGTTCTTGGAGGCCACTAAAGAGAAAACCGCCAAGTCACGGAAAAATGCAGCGAATGGCAAACTGAACAGTGCTGGATCAGATGCGTCTACCAAACCAAATCAGGTAGTTCAGCCACAGTGTCTCAACTCTGAGTCAAAGACCTGCGGAAAAAAGGCTGAAGAAATATATTTGAACCGACAAAAACCCTGTAATGGTGCCTGGGAAAATGTGGCTCCTAAACATCACATGCCCCCCAAATCTCCTACACAAGACATTCATAACTCAACAGGCCAATCTATAGCCACTATTAGCAATATAGACATTGaaatacagaaacagagaaaAGCCAAACCACCAAAACCCAGCAGCCACCAGAACAACAACCTGCCATCTGTGAGCAAGAGGAGAGAGAAAGAAGACCCCGGTGCTCCTCAAACACACCCTCACAAACAAGTGTCTGGTGTCGGCGGGACGGAGGATAAGATGTCAGCGAATGCAAGTTCAATAACACCCAAACATGCAGATGGAACCAAGATGCCAAACAAGAGTAAGGCTCTTGATGTAAGTTTGGACCTTAAAGACGACACCATGAAGCTCCTGCAGGAGGCAGGGGTGCAGGACCTCCCATACGAGCCCACTGAGCTACATCACAATGCGGAGCAAAAGACCGAGAGCCAAAGAACAGCTGATAATCAGAGCAACGCTGGTGTCCTGAAGGATGCTCCTACTGGAAGTTCAACCGAGGAGAGTGAGGAGCCGTCCCGTTCAGAGTCGCCTGCAGCTCTATCAGATGAAGGCAGGCCCTCGTCCTCGTCTTCTGAACCCTCCATGTCCCGTCAGCGCAGGCAGAGGAGAAAAGACAAGTCCCAGGACCTGCAGAACGGCATACAAGAGAAAGTGTCCAGACCTCTGCCTCCTCTCCCCGAAGATGGAAACAGTGCACAGAAAGACCAGAGCACACCAGCCAATCTCTCGTCCACTAACAAGAGCACAGACCAGCAGAATCGTCCACTGTCAGCCAGAGAGAGGAGAAGACTGAAGCAGTCGCAGGAGAACTCCACACAACAAGTCGTGTCCGCTGTCAAAAGGCCATCTTGTGATGTGCCCTCATTAGACAGTGAGCAGATACACCAGACTGACTGTCCGAGAGCTGCTAGAACAACAGTGGACACAACAAAGGAGAGGAAGTCCTCAAGGAGACAGTCTGATGAAGACGAGTGCAGTTCCTCCACCAGCTCCACTGAACGCTCAGAGGGAGACTATAGAGAACGAAAGTGTGAGAGCAATGAGATGCAAGACTTGGTGCAGATGATGACGCAGACGTTACACATGGATGGTAGAGATGCATTATTTGAGCCTGACGGACCCAGATGTCACTCCACTCCGCTGCCAGAGTTCAAACTCAATAGGAAATACCGAGACACGCTGATGCTTCATGGGAAATCCAGAGAGGCGCAGGGAGATTTACAAATCACCGGCTTCCCTTTAGatgacaGCACGGGTCCTGCAAAGGTCAGGAGGGTGATTGAACACTTGCGCACTGATGTTCTGAAAGGACTCGGGGTGAAGCTGCTGGACCGAGCGCTGGACATCATGCAGGAGGAGGACGAGGACAAGAGAGAGCTTTTGCTGCAGGAGCAAATGGGTGATGACAAATACAAGCAGTTCGCAGTGAAAGTGCGGCAGCTGAAGTTCTTTGAGGACGTCGCTTTTAAAGACTGAGCCGCTCCACAAACACTGATAAGCAATTATTACTGAtgagcagaaaacacacacacacacttcactgaaGCCTCCTATCAACAATCACTGTTACCGTTGAATGCTTTTGTAAATGTATAGTGATGATAGAACACTAGATATGCAATGAAGCTGTTATTGCGCACCTTTATAGTCATCTAGGGGGATGTGAATCTATGCTGTGTAGAATCTTGAATTTTGAAAGAGACGTTGAGAATAGTTTTCCCTTTTCCTATTTTCTGGACTGCGTATTTATATTGCGAATAATGTAAATCAATGaggaatttataataaaatatcttTTTAGGAAACTCTTTATTTCagtcgtattattattattagtttccctgagatgggttgcggctggaagggcatccgctgcgtaaaaacttgctggataagttggcggttcattccgctgtggcgaccccggattatcaaagggactaagccaacaagaaaatgaatgaatgtattattattaggtaattatttaatttgtttacatttctgttttATGAATATTTGACATACTTCCGTTTTTAACATTAAACTATGATTGAAAGTAAGATTATATACAGTGAGGTCAATAAGTATTTGATCACCCTGTGATTTTTTAAGATATCCTACATAGAGATCATGGAGGGGTCTAGAATGTTCAGCATAGCTGCATGTCCACTGTGAGAGACAGAATTGTCTGATTTTTgaacaatttatttgtaaattagcaTCAAATAAGTCCTCACCGGGTTTACACACACTTCAGAAGGGAGAACTTTTTGGTCTTAACTCCATTCGCTGTGTTTGGAGGAGGAATGATGAGTATCATCCCAATAATATTatacctacagtgaagcatgacaatgacccaaagcacacagccaGGAAGACCAAGGAGTGGCTCTGTAAGAATCATATCAAGGTTATGGAGTGGCCTAGCCAgtctccaaacctaaacccaatagAAAATCTTTGGATGGAGCTGAATGCTGAAAATTCGTGTTGCTCAGCGACAGCCCCTAAACCTGACAGATCTAAAGAAGATCTGATGGAGGAGTGGGTCAACATCCCTCCTGCACTGTGTGTGTAAACCTGGTGAGGACTTATTTGAtgctaatttacaaataaattgttcAAAAATCGTACAATTCTGTCTCTCACAGTGGACAAGCACCTATGCTGAACATTCTAGACCCCTCCATGATTTCTATGTAGGATATCTTGAAAAATCACAGGGTTATCAAATACTTATTGACCTCACTGTATATGCAATtacatgcatttgtttatatattgctTTATAGCTTTCATAAATGCTCAATTTTAGGTAGCAAGGATatgtaatttcatttattttaatgtacatttttacaaatgaGAAGATGCGGTAAAAATTAAGCTGACATATAGATtggttattaaaattaaaagtgaaaacatttgcgaaaataacatttaaaaatgacagattttagAAAGTTAGCATAACATAAATTGCTGTGTGCATGACTTGTATGCTATGTGGGAAATTTacaaaacaccacacacacacacacatataccaaACACAGTTGTTTATTACATATTGCATGTATGAAGGTGAAAATAATCGAAAGGGTTTTCATATAGACTTTGTTTCTGCTGTATTTCTGCGTTGCTGTGCCGAATCCGCAGTAAAATCCCATCACTtgtgcttcttcttcttctggttCTCCTGAGGTTTCTCCCGGGTTTCTGCAGGCGTCTCAGGTAAAGCCGGCTGCCAGTTCAAAGGGCTTTTTCTGTACATCGGCCACGGAGGAAGAGTAAGCTAGaggaacaacacacacacacacacacacacacacacactattaaacACACTGCAGGCTTCAGTTTTAAGGATTGAGGTTTAAAAATTGAATGAGACAAGATAGTAAAGAATGTAAAGAAGTATAAGTGGACTCATACTAGTTGAATTATGTCTAATGGTAACTGTGTTGATACTGTATATATGGACTTGTCTCTACTCGTTCCTTGAAACTAAGGTGTGCAGTATGGATGTAATTTtatggcatggtggcttagtggttagcactgtcacctcacagcaagaaggtcgccggttcgagtcccagctggaccagttggcatttctgtgtggagtttgcatgttctccccgtgttggcgtgggtttcctccgggtgctccgttttcccccacaagtccaaagacatgcggcataggtgaattaaattaactaaattggccgtactgtatgagtttgtgtgagggtatatggttgtttcccagtactgggttgcagctggaagggcatttactgtgtaaaaaatatgctggataagttggcgctgtGGCGAGccgataaataaagggactaagctgaaggaaaatgaataaatgaatttatttatatatttcttttaatttaatatgatttttttacagtgcggtGAGCTCTGCTGTGACGTGAAGTTTCCTTTAGGATTAATAAagtctaaacaaacaaacaaagtagtgcaattataattttaaacaaataaataatgaattaatatgaAACAATGAAGTAATATtgagtaaaatgagtaagtatatgtgtaaataaactaaataataataataacaacaacaacaataataataataaaatatgattgaatacgatgcaaataaataaaccaaaattgtatataaataaatttcagtaaTGTCAATTACATAaacactaattaaataaaaaatattgataaaaaaatattaattaaaataaattaattatatagtgtgtgtaaatatttaaaaatatatatatttataataatttcaacAGTATAAACGTACCAAACAGGACACGGTGAATCCAGCCAGCATTATGTAAACCGTCCATCCAAACTGCTGAACAATTAAACCGTAGATGAAGCCGATCGCCTGCAGGGTAAACACACATCAGACAGAGCACAAAAatcaacaaacattcacattACTACACagtttgtgaaaaaaataattttttacaaatatttttgtgtaACTTTCTGAGAAACTGAAGCAAATTATTATCAATAACAAAAATGGACGTTTTGGAAAACAGAAGAAATTAactaatacacttttttttaaggtggatatatatatatatatatatata
>TCONS_00007405
CCAAAACAAGTTTGAAAAACAAATCACCGTCGTTACATTGAGAAGAAGTCATTTAACTACTGCACACTGAAAAAAACCTCTCGCTATGTGATACAGGCAGCATCTCTGGGAGGAGGATCATGGACGGATATTTATTCGTCAGAGTTGTGGGGAAGGGGAGCTACGGGGAAGTCAACCTGGTCCGACACAAATCCGACCGTAAACAGTATGTGATCAAGAAGCTGAACCTGAGGACGTCCTCCAGACGTGAACGGCGAGCAGCGGAGCAGGAGGCGCAGCTCCTTTCCCAGCTTAAACATCCCAACATCGTCATGTACCGGGAATCATGGGAAGGCGAGGACTGTCAGCTGTACATCGTGATGGGCTTCTGTGAGGGAGGAGATCTGTACCACAGACTCAAACAGCAGAAAGGAGAGCTGCTGCCTGAGAGACAGGTGGTGGAGTGGTTTGTTCAGATCGCCATGGCTCTTCAGTATTTACACGAGAAGCACATTTTACATCGAGATCTGAAAACGCAGAATATCTTCTTGACCAAGACCAACATAATCAAGGTGGGCGATCTGGGCATCGCACGAGTCTTGGAGAATCAGAACGATATGGCCAGCACTCTGATCGGCACACCGTACTACATGAGTCCGGAGCTGTTCTCCAACAAGCCGTACAACTACAAGtCGGACGTGTGGGCGCTGGGATGTTGTGTGTATGAGATGGCAACCCTAAAGCATGCCTTCAATGCAAAGGACATGAACTCACTTGTGTATCGGATCGTAGAAGGAAAGTTACCACAGATGCCAAGTAAGTACGACCCTCAGCTGGGAGAACTGATAAAGCGCATGCTGTGTAAGAAGCCAGAGGACAGACCAGATGTCAAACACATCCTCCGACAGCCATATATTAAACATCAGATCTCCATGTTCTTGGAGGCCACTAAAGAGAAAACCGCCAAGTCACGGAAAAATGCAGCGAATGGCAAACTGAACAGTGCTGGATCAGATGCGTCTACCAAACCAAATCAGGTAGTTCAGCCACAGTGTCTCAACTCTGAGTCAAAGACCTGCGGAAAAAAGGCTGAAGAAATATATTTGAACCGACAAAAACCCTGTAATGGTGCCTGGGAAAATGTGGCTCCTAAACATCACATGCCCCCCAAATCTCCTACACAAGACATTCATAACTCAACAGGCCAATCTATAGCCACTATTAGCAATATAGACATTGaaatacagaaacagagaaaAGCCAAACCACCAAAACCCAGCAGCCACCAGAACAACAACCTGCCATCTGTGAGCAAGAGGAGAGAGAAAGAAGACCCCGGTGCTCCTCAAACACACCCTCACAAACAAGTGTCTGGTGTCGGCGGGACGGAGGATAAGATGTCAGCGAATGCAAGTTCAATAACACCCAAACATGCAGATGGAACCAAGATGCCAAACAAGAGTAAGGCTCTTGATGTAAGTTTGGACCTTAAAGACGACACCATGAAGCTCCTGCAGGAGGCAGGGGTGCAGGACCTCCCATACGAGCCCACTGAGCTACATCACAATGCGGAGCAAAAGACCGAGAGCCAAAGAACAGCTGATAATCAGAGCAACGCTGGTGTCCTGAAGGATGCTCCTACTGGAAGTTCAACCGAGGAGAGTGAGGGAAGTTTAGATTCCACAGAGAAACTACTCAAGCCTGTTCCTGTAATATTTATGGAGCCGTCCCGTTCAGAGTCGCCTGCAGCTCTATCAGATGAAGGCAGGCCCTCGTCCTCGTCTTCTGAACCCTCCATGTCCCGTCAGCGCAGGCAGAGGAGAAAAGACAAGTCCCAGGACCTGCAGAACGGCATACAAGAGAAAGTGTCCAGACCTCTGCCTCCTCTCCCCGAAGATGGAAACAGTGCACAGAAAGACCAGAGCACACCAGCCAATCTCTCGTCCACTAACAAGAGCACAGACCAGCAGAATCGTCCACTGTCAGCCAGAGAGAGGAGAAGACTGAAGCAGTCGCAGGAGAACTCCACACAACAAGTCGTGTCCGCTGTCAAAAGGCCATCTTGTGATGTGCCCTCATTAGACAGTGAGCAGATACACCAGACTGACTGTCCGAGAGCTGCTAGAACAACAGTGGACACAACAAAGGAGAGGAAGTCCTCAAGGAGACAGTCTGATGAAGACGAGTGCAGTTCCTCCACCAGCTCCACTGAACGCTCAGAGGGAGACTATAGAGAACGAAAGTGTGAGAGCAATGAGATGCAAGACTTGGTGCAGATGATGACGCAGACGTTACACATGGATGGTAGAGATGCATTATTTGAGCCTGACGGACCCAGATGTCACTCCACTCCGCTGCCAGAGTTCAAACTCAATAGGAAATACCGAGACACGCTGATGCTTCATGGGAAATCCAGAGAGGCGCAGGGAGATTTACAAATCACCGGCTTCCCTTTAGatgacaGCACGGGTCCTGCAAAGGTCAGGAGGGTGATTGAACACTTGCGCACTGATGTTCTGAAAGGACTCGGGGTGAAGCTGCTGGACCGAGCGCTGGACATCATGCAGGAGGAGGACGAGGACAAGAGAGAGCTTTTGCTGCAGGAGCAAATGGGTGATGACAAATACAAGCAGTTCGCAGTGAAAGTGCGGCAGCTGAAGTTCTTTGAGGACGTCGCTTTTAAAGACTGAGCCGCTCCACAAACACTGATAAGCAATTATTACTGAtgagcagaaaacacacacacacacttcactgaaGCCTCCTATCAACAATCACTGTTACCGTTGAATGCTTTTGTAAATGTATAGTGATGATAGAACACTAGATATGCAATGAAGCTGTTATTGCGCACCTTTATAGTCATCTAGGGGGATGTGAATCTATGCTGTGTAGAATCTTGAATTTTGAAAGAGACGTTGAGAATAGTTTTCCCTTTTCCTATTTTCTGGACTGCGTATTTATATTGCGAATAATGTAAATCAATGaggaatttataataaaatatcttTTTAGGAAACTCTT

Function

symbol description
nek4 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human NEK4 (NIMA related kinase 4).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1392 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human NEK4 (NIMA related kinase 4).

Ensembl:

ensembl_id ENSDARG00000040152

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007404 False 5932 mRNA 0.42 15 3991911 4024087
TCONS_00007405 True 3003 mRNA 0.48 16 3994747 4023940

Neighbor

gene id symbol gene type direction distance location
XLOC_003854 glt8d1 coding downstream 4026 3971716 ~ 3987885 (-)
XLOC_003852 pbrm1 coding downstream 32022 3909756 ~ 3959889 (-)
XLOC_003853 CR450797.1 coding downstream 38074 3953723 ~ 3953837 (-)
XLOC_003851 rpn1 coding downstream 83974 3892386 ~ 3907937 (-)
XLOC_003850 gata2a coding downstream 126439 3847442 ~ 3865472 (-)
XLOC_003856 BX571768.1 coding upstream 13953 4038040 ~ 4137242 (-)
XLOC_003857 ccdc3b coding upstream 124721 4148808 ~ 4175773 (-)
XLOC_003858 BX248331.2 coding upstream 162935 4187022 ~ 4194697 (-)
XLOC_003859 FAM107A coding upstream 181480 4205567 ~ 4235811 (-)
XLOC_003860 NA coding upstream 239961 4264048 ~ 4281694 (-)
XLOC_003938 BX324177.10 misc upstream 7314717 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 7343507 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 7346368 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 7356817 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 7359746 11383833 ~ 11384130 (-)
XLOC_003843 NA non-coding downstream 496947 3385104 ~ 3494964 (-)
XLOC_003838 NA non-coding downstream 1009529 2976603 ~ 2982382 (-)
XLOC_003837 NA non-coding downstream 1148028 2842098 ~ 2843883 (-)
XLOC_003835 NA non-coding downstream 1231545 2756893 ~ 2760366 (-)
XLOC_003862 BX248331.4 non-coding upstream 262543 4286630 ~ 4290096 (-)
XLOC_003864 CT033790.2 non-coding upstream 275004 4299091 ~ 4302567 (-)
XLOC_003865 NA non-coding upstream 285189 4309276 ~ 4350341 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017166 NA coding CM030122.1 CM030122.1 49360827 ~ 49368839 (+)