Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_003850 |
| gene name | gata2a |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 3847442 ~ 3865472 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| gata2a | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within animal organ development and dorsal aorta morphogenesis. Predicted to be located in nucleus. Is expressed in several structures, including hematopoietic system; mesoderm; nervous system; neural tube; and trunk vasculature. Human ortholog(s) of this gene implicated in acute myeloid leukemia; immunodeficiency 21; mental depression; myelodysplastic syndrome; and myeloid leukemia. Orthologous to human GATA2 (GATA binding protein 2). |
| id | name | namespace |
|---|---|---|
| GO:0030097 | hemopoiesis | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0045766 | positive regulation of angiogenesis | biological_process |
| GO:1902895 | positive regulation of pri-miRNA transcription by RNA polymerase II | biological_process |
| GO:0045165 | cell fate commitment | biological_process |
| GO:0048821 | erythrocyte development | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0003190 | atrioventricular valve formation | biological_process |
| GO:0060215 | primitive hemopoiesis | biological_process |
| GO:0035912 | dorsal aorta morphogenesis | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0021514 | ventral spinal cord interneuron differentiation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-980526-260 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within animal organ development and dorsal aorta morphogenesis. Predicted to be located in nucleus. Is expressed in several structures, including hematopoietic system; mesoderm; nervous system; neural tube; and trunk vasculature. Human ortholog(s) of this gene implicated in acute myeloid leukemia; immunodeficiency 21; mental depression; myelodysplastic syndrome; and myeloid leukemia. Orthologous to human GATA2 (GATA binding protein 2). |
| ensembl_id | ENSDARG00000059327 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00007392 | False | 2829 | mRNA | 0.51 | 5 | 3847442 | 3860199 |
| TCONS_00007393 | False | 2533 | mRNA | 0.52 | 6 | 3847883 | 3860534 |
| TCONS_00007394 | True | 781 | mRNA | 0.52 | 3 | 3858370 | 3865472 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_003849 | itih1 | coding | downstream | 200428 | 3630627 ~ 3647014 (-) |
| XLOC_003848 | itih3a | coding | downstream | 218226 | 3614326 ~ 3629216 (-) |
| XLOC_003847 | dnajc16l | coding | downstream | 233884 | 3593127 ~ 3613558 (-) |
| XLOC_003846 | si:dkey-33m11.7 | coding | downstream | 273131 | 3563091 ~ 3574311 (-) |
| XLOC_003845 | CAMK2N1 | coding | downstream | 295375 | 3550370 ~ 3552067 (-) |
| XLOC_003851 | rpn1 | coding | upstream | 26914 | 3892386 ~ 3907937 (-) |
| XLOC_003852 | pbrm1 | coding | upstream | 44284 | 3909756 ~ 3959889 (-) |
| XLOC_003853 | CR450797.1 | coding | upstream | 88251 | 3953723 ~ 3953837 (-) |
| XLOC_003854 | glt8d1 | coding | upstream | 106244 | 3971716 ~ 3987885 (-) |
| XLOC_003855 | nek4 | coding | upstream | 126439 | 3991911 ~ 4024087 (-) |
| XLOC_003938 | BX324177.10 | misc | upstream | 7473332 | 11338804 ~ 11339100 (-) |
| XLOC_003942 | BX324177.17 | misc | upstream | 7502122 | 11367594 ~ 11367890 (-) |
| XLOC_003943 | BX324177.3 | misc | upstream | 7504983 | 11370455 ~ 11370653 (-) |
| XLOC_003944 | BX324177.4 | misc | upstream | 7515432 | 11380904 ~ 11381204 (-) |
| XLOC_003945 | BX324177.6 | misc | upstream | 7518361 | 11383833 ~ 11384130 (-) |
| XLOC_003843 | NA | non-coding | downstream | 352478 | 3385104 ~ 3494964 (-) |
| XLOC_003838 | NA | non-coding | downstream | 865060 | 2976603 ~ 2982382 (-) |
| XLOC_003837 | NA | non-coding | downstream | 1003559 | 2842098 ~ 2843883 (-) |
| XLOC_003835 | NA | non-coding | downstream | 1087076 | 2756893 ~ 2760366 (-) |
| XLOC_003826 | NA | non-coding | downstream | 1398928 | 2446641 ~ 2448514 (-) |
| XLOC_003858 | BX248331.2 | non-coding | upstream | 321550 | 4187022 ~ 4194697 (-) |
| XLOC_003860 | NA | non-coding | upstream | 398576 | 4264048 ~ 4281694 (-) |
| XLOC_003862 | BX248331.4 | non-coding | upstream | 421158 | 4286630 ~ 4290096 (-) |
| XLOC_003864 | CT033790.2 | non-coding | upstream | 433619 | 4299091 ~ 4302567 (-) |
