RNA id: TCONS_00007394


Basic Information

Item Value
RNA id TCONS_00007394
length 781
RNA type mRNA
GC content 0.52
exon number 3
gene id XLOC_003850
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3847442 ~ 3865472 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCACTGAAGAAAGATCCTCATTCTGGAAAGACGCTCGTCTGTCTGGAAAGGTTGGCATCGCCCGCTAGAAGACTGCGCCCGGAGCCTCAGCGCTTCTCAAAGCACAACGAATCACCGCTGctcttcccaaaaaaaaaaaaaagactgtgcCACACGGAATTGGCCCCAGGACACATTTCTCTGCGAAATGTCAAGAGGAGAGAACCTAATCATAAACACTGGTGTCCCTGGCCACCCTTGAATGCAAAGAAGCAGGACCTCTACACTCCTTCAAAAATAAAAGCATGCTCAGAAAGTAAACAGAGCATCGCCACCTGAAGCATTAAGCTAACGAcagatattttaataatctaacGGACTATAGTGGTGCTTTCGGGTCTGTAGTGTCAAGTAAACTTTTCCAAGCATTTTCTAAGCGCGGACACTTGAGATGGAGGTTGCGGCCGATCAGTCTCGATGGATGGCCCACCATCATGCGGTACTCAATGGCCAGCACCCAGAGTCACATCATCACGGGCTTACACACAATTACATGGAGCCCATGGCCCCTCTTCTACCCCCGGACGAGGTGGATGTGTTCTTGAATCACTTGGACTCGCAGGGGAACCCCTACTACTCCAACTCTCGGGCTAGAGTATCGTACGGACAAGCGCACGCTCGTCTCACGGGAAGTCAGGTCTGTCGGCCACACCTCATACACAGTCCCGGTATTCCCTGGCTGGACAGCGGGAAGGCAGCGCTCTCCGCCGCCCACCACAACGCCTGGGCGGTCAGCCACTT

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045766 positive regulation of angiogenesis biological_process
GO:1902895 positive regulation of pri-miRNA transcription by RNA polymerase II biological_process
GO:0045165 cell fate commitment biological_process
GO:0048821 erythrocyte development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0003190 atrioventricular valve formation biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0035912 dorsal aorta morphogenesis biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-260 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within animal organ development and dorsal aorta morphogenesis. Predicted to be located in nucleus. Is expressed in several structures, including hematopoietic system; mesoderm; nervous system; neural tube; and trunk vasculature. Human ortholog(s) of this gene implicated in acute myeloid leukemia; immunodeficiency 21; mental depression; myelodysplastic syndrome; and myeloid leukemia. Orthologous to human GATA2 (GATA binding protein 2).

Ensembl:

ensembl_id ENSDART00000161426

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007389 lncRNA downstream 229182 3625121 ~ 3629188 (-) True XLOC_003848
TCONS_00007386 lncRNA downstream 253543 3602180 ~ 3604827 (-) True XLOC_003847
TCONS_00008740 lncRNA downstream 306303 3550371 ~ 3552067 (-) True XLOC_003845
TCONS_00008739 lncRNA downstream 363406 3385104 ~ 3494964 (-) False XLOC_003843
TCONS_00007377 lncRNA downstream 486343 3370355 ~ 3372027 (-) True XLOC_003842
TCONS_00007402 lncRNA upstream 109471 3974943 ~ 3984481 (-) False XLOC_003854
TCONS_00007403 lncRNA upstream 118523 3983995 ~ 3987809 (-) True XLOC_003854
TCONS_00008741 lncRNA upstream 262825 4128297 ~ 4132814 (-) True XLOC_003856
TCONS_00007408 lncRNA upstream 321550 4187022 ~ 4194697 (-) True XLOC_003858
TCONS_00008444 lncRNA upstream 398576 4264048 ~ 4281694 (-) True XLOC_003860
TCONS_00007391 mRNA downstream 211356 3630824 ~ 3647014 (-) True XLOC_003849
TCONS_00007390 mRNA downstream 211577 3630627 ~ 3646793 (-) False XLOC_003849
TCONS_00007387 mRNA downstream 229154 3614326 ~ 3629216 (-) False XLOC_003848
TCONS_00007388 mRNA downstream 229169 3623856 ~ 3629201 (-) False XLOC_003848
TCONS_00007385 mRNA downstream 244812 3593127 ~ 3613558 (-) False XLOC_003847
TCONS_00007395 mRNA upstream 26914 3892386 ~ 3897067 (-) False XLOC_003851
TCONS_00007396 mRNA upstream 27795 3893267 ~ 3907937 (-) True XLOC_003851
TCONS_00007397 mRNA upstream 44284 3909756 ~ 3959477 (-) False XLOC_003852
TCONS_00007398 mRNA upstream 44284 3909756 ~ 3959889 (-) False XLOC_003852
TCONS_00007399 mRNA upstream 44700 3910172 ~ 3954691 (-) True XLOC_003852
TCONS_00007330 other downstream 2769855 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 2878622 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 3398440 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 3506669 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 88251 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 2206488 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 2331804 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 2915236 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 3078828 6944300 ~ 6948018 (-) False XLOC_003898

Expression Profile

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