RNA id: TCONS_00007386


Basic Information

Item Value
RNA id TCONS_00007386
length 538
lncRNA type retained_intron
GC content 0.45
exon number 3
gene id XLOC_003847
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3593127 ~ 3613558 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCGCCTATAAAGACTATGTGAGGTTTGGATATGTGGATATGGGCCTGACTGAGACCTCCAAAGTCGTGCAGAGATTCAACATTAACACATATGCGCCAACAATGCTCCTGTTTAAAGAGAACACTGAGAAACCTGCTGATGTTATACAGGCAAGAGGAATGAAAAAGCAGATCCTTGACGAGTTTGTGTCAAATAATCGTTTTCTTCTGGTGCCGCGTCTGGTGAATCAGAAACTCTTTGATGAGCTGTGTCCTGTTAAACAGTTCCACCGTCGCAGGAAGTACTGTGTTCTGCTGGTTACTGGTGAAGGAGAGCAGTTTGTGTCCGTGAACGAAGCCTTCTTTGACTTTGCTTCCTCCAACACTAAGGAAGTTCTCCGGTTCGCTTATGTTGATCAGAGACAACAGCAACCTCTTTGTGACACCCTACTCAAGAAAGACGACACAACCCCTCCACAGGTCAGAGATGGTATTGTCCTCATCCACACATTAACTGTTTCCATCCATGAATAAGCCAACGGACCgactaaattgtaca

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-696 Predicted to be located in membrane. Orthologous to human DNAJC16 (DnaJ heat shock protein family (Hsp40) member C16).

Ensembl:

ensembl_id ENSDART00000161851

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008740 lncRNA downstream 50113 3550371 ~ 3552067 (-) True XLOC_003845
TCONS_00008739 lncRNA downstream 107216 3385104 ~ 3494964 (-) False XLOC_003843
TCONS_00007377 lncRNA downstream 230153 3370355 ~ 3372027 (-) True XLOC_003842
TCONS_00007374 lncRNA downstream 235696 3351170 ~ 3366484 (-) False XLOC_003842
TCONS_00007372 lncRNA downstream 260493 3340299 ~ 3341687 (-) True XLOC_003841
TCONS_00007389 lncRNA upstream 20294 3625121 ~ 3629188 (-) True XLOC_003848
TCONS_00007402 lncRNA upstream 370116 3974943 ~ 3984481 (-) False XLOC_003854
TCONS_00007403 lncRNA upstream 379168 3983995 ~ 3987809 (-) True XLOC_003854
TCONS_00008741 lncRNA upstream 523470 4128297 ~ 4132814 (-) True XLOC_003856
TCONS_00007408 lncRNA upstream 582195 4187022 ~ 4194697 (-) True XLOC_003858
TCONS_00007384 mRNA downstream 27869 3563173 ~ 3574311 (-) True XLOC_003846
TCONS_00007383 mRNA downstream 30575 3563091 ~ 3571605 (-) False XLOC_003846
TCONS_00007382 mRNA downstream 50113 3550370 ~ 3552067 (-) False XLOC_003845
TCONS_00007379 mRNA downstream 66599 3523358 ~ 3535581 (-) False XLOC_003844
TCONS_00007381 mRNA downstream 66643 3530391 ~ 3535537 (-) True XLOC_003844
TCONS_00007387 mRNA upstream 9499 3614326 ~ 3629216 (-) False XLOC_003848
TCONS_00007388 mRNA upstream 19029 3623856 ~ 3629201 (-) False XLOC_003848
TCONS_00007390 mRNA upstream 25800 3630627 ~ 3646793 (-) False XLOC_003849
TCONS_00007391 mRNA upstream 25997 3630824 ~ 3647014 (-) True XLOC_003849
TCONS_00007392 mRNA upstream 242615 3847442 ~ 3860199 (-) False XLOC_003850
TCONS_00007330 other downstream 2513665 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 2622432 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 3142250 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 3250479 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 348896 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 2467133 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 2592449 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 3175881 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 3339473 6944300 ~ 6948018 (-) False XLOC_003898

Expression Profile

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