RNA id: TCONS_00007389


Basic Information

Item Value
RNA id TCONS_00007389
length 651
lncRNA type retained_intron
GC content 0.45
exon number 5
gene id XLOC_003848
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3614326 ~ 3629216 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTAAAGTGGATGGTGTGCCATGTCTTCAAGGTGGATTTTATGCGTGTTTTTGTACATCTCTTTTACTTCATGGTCATATGAGACTCTCTTCATTTCAAAGAGCAATGGACATTGGCACGACGACACCACCATGACCAAACACTTAAAGAAGCGAAGTGTGAGCAGTGCTGAGATAGAGGTGCAGAGTGTGAAGGTGGACTGCAAAGTCACATCCCGTTTCGCCCACACCGTCATGACCACTAAAGCTCTCAATAAGGCCAACGTCTCACAGGAAGTGTTCTTTGAGGTGGAGTTACCCAAGACCTCCTTCATCACCAACTTCAGCATggagATTGATGGCAAGATGTACACGGGTGTGGTGAAGGAAAAAGAGAAGGCCCAGCAGCAGTATCAGAGGGCTGTTTCTTCAGGCCGGACTGCTGGTTTAGTCAAGTGGGAAGACAAAAACTAAAAGCCAACACAACTTTTAGACTGCTTAATGCAAACTTGAAACTAACGAATTGATATTTTCCCAGGGCTTCGGGTAGAAAAATGGAAAAGTTTTCTGTTTCAGTGAACGTCGCAGCAAAGAGCAGTGTCACATTCATTCTGACCCATGAGGAACTTCTTCAGCGGAGGTTTAGCAAATATGAGCTCATGATCAGAGTCAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000141710

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007386 lncRNA downstream 20294 3602180 ~ 3604827 (-) True XLOC_003847
TCONS_00008740 lncRNA downstream 73054 3550371 ~ 3552067 (-) True XLOC_003845
TCONS_00008739 lncRNA downstream 130157 3385104 ~ 3494964 (-) False XLOC_003843
TCONS_00007377 lncRNA downstream 253094 3370355 ~ 3372027 (-) True XLOC_003842
TCONS_00007374 lncRNA downstream 258637 3351170 ~ 3366484 (-) False XLOC_003842
TCONS_00007402 lncRNA upstream 345755 3974943 ~ 3984481 (-) False XLOC_003854
TCONS_00007403 lncRNA upstream 354807 3983995 ~ 3987809 (-) True XLOC_003854
TCONS_00008741 lncRNA upstream 499109 4128297 ~ 4132814 (-) True XLOC_003856
TCONS_00007408 lncRNA upstream 557834 4187022 ~ 4194697 (-) True XLOC_003858
TCONS_00008444 lncRNA upstream 634860 4264048 ~ 4281694 (-) True XLOC_003860
TCONS_00007385 mRNA downstream 11563 3593127 ~ 3613558 (-) False XLOC_003847
TCONS_00007384 mRNA downstream 50810 3563173 ~ 3574311 (-) True XLOC_003846
TCONS_00007383 mRNA downstream 53516 3563091 ~ 3571605 (-) False XLOC_003846
TCONS_00007382 mRNA downstream 73054 3550370 ~ 3552067 (-) False XLOC_003845
TCONS_00007381 mRNA downstream 89584 3530391 ~ 3535537 (-) True XLOC_003844
TCONS_00007390 mRNA upstream 1439 3630627 ~ 3646793 (-) False XLOC_003849
TCONS_00007391 mRNA upstream 1636 3630824 ~ 3647014 (-) True XLOC_003849
TCONS_00007392 mRNA upstream 218254 3847442 ~ 3860199 (-) False XLOC_003850
TCONS_00007393 mRNA upstream 218695 3847883 ~ 3860534 (-) False XLOC_003850
TCONS_00007394 mRNA upstream 229182 3858370 ~ 3865472 (-) True XLOC_003850
TCONS_00007330 other downstream 2536606 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 2645373 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 3165191 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 3273420 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 324535 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 2442772 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 2568088 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 3151520 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 3315112 6944300 ~ 6948018 (-) False XLOC_003898

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU116775 True 616 lncRNA 0.45 3 NC_048566.1 583915 ~ 585015 (+)
tiger barb (Puntius tetrazona) TU116775 True 1526 lncRNA 0.37 2 NC_056709.1 3231127 ~ 3232742 (-)
tiger barb (Puntius tetrazona) TU263193 False 245 lncRNA 0.55 2 NW_025047844.1 310434 ~ 353746 (+)
mexican tetra (Astyanax mexicanus) TU263193 True 424 lncRNA 0.48 5 NC_035918.1 31144331 ~ 31145937 (-)