RNA id: TU116775


Basic Information

Item Value
RNA id TU116775
length 616
lncRNA type intronic
GC content 0.45
exon number 3
gene id G104044
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 582235 ~ 585015 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtagaattacaggatattaactagcaacaacaacatctctctaccccatgacaaaatgtgtagaattgcaggatattaactagcaacaacaacatatctctaccccatgacaaaatgtgtagaattgcaggatattaactagcaacaacaacaacatctctctaccccatgacaaaatgtgtagaattgcaggatattagctagcaacaacaacatctctctaccccatgacaaaatgtgtagaattacaggatattagctagcaacaacaacatctctctaccccattacaaaatgtgtagaattacaggatattagctagcaacaacaacatctctctacccccatgacaaaatgtgtagaattgcaggatattagctagcaacaacaacaTATCTCtacccccatgacaaaatgtgtagaattacaggatattaactagcaacaacaacaacatatctctaccccatgacaaaatgtgtagaattgcaggatattaactagcaacaacaacaacatctctctacccccatgacaaaatgtgtagaattgcaggatattagctagcaacaacaacaTATCTCTCTACCCCATGaccaaatgtgtagaattac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116774 lncRNA upstream 568 582235 ~ 583347 (+) False G104044
TU116773 lncRNA upstream 568 582622 ~ 583347 (+) False G104044
TU116762 lncRNA upstream 15365 568134 ~ 568550 (+) True G104033
TU116752 lncRNA upstream 33469 549708 ~ 550446 (+) False G104024
TU116753 lncRNA upstream 33469 549708 ~ 550446 (+) True G104024
TU116780 lncRNA downstream 2282 587297 ~ 587671 (+) True G104047
TU116783 lncRNA downstream 9342 594357 ~ 595015 (+) True G104049
TU116796 lncRNA downstream 18495 603510 ~ 603948 (+) True G104051
TU116809 lncRNA downstream 33292 618307 ~ 618853 (+) True G104060
TU116818 lncRNA downstream 47759 632774 ~ 633339 (+) True G104067
XM_036934821.1 mRNA upstream 565819 13864 ~ 18096 (+) True LOC118936272
XM_036934878.1 mRNA downstream 129715 714730 ~ 722393 (+) False zgc:110410
XM_036934871.1 mRNA downstream 129772 714787 ~ 722393 (+) True zgc:110410
XR_005034561.1 mRNA downstream 139776 724791 ~ 725975 (+) False LOC118937316
XM_036934927.1 mRNA downstream 275444 860459 ~ 871969 (+) False cmc1
XM_036934910.1 mRNA downstream 275444 860459 ~ 871976 (+) False cmc1
TU116509 other upstream 402893 174996 ~ 181022 (+) True G103851
TU116869 other downstream 105031 690046 ~ 701271 (+) True G104092
TU116937 other downstream 275491 860506 ~ 872515 (+) False cmc1
TU116938 other downstream 275491 860506 ~ 872515 (+) False cmc1
TU116939 other downstream 275491 860506 ~ 872515 (+) True cmc1
TU117843 other downstream 568046 1153061 ~ 1153749 (+) True G104761

Expression Profile