RNA id: TU116752


Basic Information

Item Value
RNA id TU116752
length 581
lncRNA type intronic
GC content 0.38
exon number 4
gene id G104024
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 549708 ~ 550446 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGTCAGCTTAAAATGTTTTCCTGCTCATTTTTTTGTTGCCTGAACATTTCACATGTTGTTGGCCACGTTAACCTTTCTGTTCTATTACCTtacctctttaaaaaaaaaggccTGAAGAAAGAAAGCTAGTTGTCAGAATAACAATATGGTTCGAAAGTGTTGTCGTTAAATCAGACATGCCACTCTTCAGTACTGAGAAAGGTGCTGATGTATTTAGTCACCATCATTTTACCATCAGAAGGTATCTGTCTCCTGTACTGAGAAAGGAGATGATATAAACAGTAACCATCAGAAGGTATCTGTCTCCAGTACTGAGAAAGGAGATGATATATACAGTAACCATCAGAAGGTATCTGTCTCCAGTACTCAGAAAGGAGATGATATATACAGTAACCATCAGAAGGTATCTGTCTCCAGTACTGAGAAAGGAGATGATATATACAGTAACCATCAGAAGGTATCTGTCTCCAGTACTGAGAAAGGAGATGATATATACAGTAACCATCAGAAGGTATCTGTCTCCTGCACTAAGAAAGGAGatgatatataaacagctttTATTTTGCAGTGCTACCAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116731 lncRNA upstream 40714 508715 ~ 508994 (+) True G104006
TU116725 lncRNA upstream 41086 506726 ~ 508622 (+) True G104005
TU116698 lncRNA upstream 82670 466387 ~ 467038 (+) True G103987
TU116694 lncRNA upstream 87393 460114 ~ 462315 (+) True G103985
TU116680 lncRNA upstream 95932 450766 ~ 453776 (+) True G103977
TU116762 lncRNA downstream 17688 568134 ~ 568550 (+) True G104033
TU116774 lncRNA downstream 31789 582235 ~ 583347 (+) False G104044
TU116773 lncRNA downstream 32176 582622 ~ 583347 (+) False G104044
TU116776 lncRNA downstream 32176 582622 ~ 585015 (+) False G104044
TU116775 lncRNA downstream 33469 583915 ~ 585015 (+) True G104044
XM_036934821.1 mRNA upstream 531612 13864 ~ 18096 (+) True LOC118936272
XM_036934878.1 mRNA downstream 164284 714730 ~ 722393 (+) False zgc:110410
XM_036934871.1 mRNA downstream 164341 714787 ~ 722393 (+) True zgc:110410
XR_005034561.1 mRNA downstream 174345 724791 ~ 725975 (+) False LOC118937316
XM_036934927.1 mRNA downstream 310013 860459 ~ 871969 (+) False cmc1
XM_036934910.1 mRNA downstream 310013 860459 ~ 871976 (+) False cmc1
TU116509 other upstream 368686 174996 ~ 181022 (+) True G103851
TU116869 other downstream 139600 690046 ~ 701271 (+) True G104092
TU116937 other downstream 310060 860506 ~ 872515 (+) False cmc1
TU116938 other downstream 310060 860506 ~ 872515 (+) False cmc1
TU116939 other downstream 310060 860506 ~ 872515 (+) True cmc1
TU117843 other downstream 602615 1153061 ~ 1153749 (+) True G104761

Expression Profile