RNA id: TU116680


Basic Information

Item Value
RNA id TU116680
length 348
lncRNA type intronic
GC content 0.50
exon number 2
gene id G103977
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 450766 ~ 453776 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacaacactactctcccctgtctgacacaacactactctcccctgtctaacacaacactactctcccctgtctaacacaacactactctcctctgtctaacacaacactactctcccctgtctaacacaacactactctcccctgtctaacacaacactactctcccctgtctaacacaacactactctcccctgtctaacacaacactactctcccctgtctaacacaacactactcttccctgtctgacacaacacaacactactctcccctgtctaacacaacactactctcccctgtctaacacaacactactctcccctgtctaacacaacactactctcccc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116663 lncRNA upstream 6494 437484 ~ 444272 (+) False G103965
TU116664 lncRNA upstream 6494 442347 ~ 444272 (+) True G103965
TU116667 lncRNA upstream 8466 423319 ~ 442300 (+) True G103967
TU116665 lncRNA upstream 24071 425302 ~ 426695 (+) True G103966
TU116657 lncRNA upstream 37612 412504 ~ 413154 (+) True G103960
TU116694 lncRNA downstream 6338 460114 ~ 462315 (+) True G103985
TU116698 lncRNA downstream 12611 466387 ~ 467038 (+) True G103987
TU116725 lncRNA downstream 52950 506726 ~ 508622 (+) True G104005
TU116731 lncRNA downstream 54939 508715 ~ 508994 (+) True G104006
TU116752 lncRNA downstream 95932 549708 ~ 550446 (+) False G104024
XM_036934821.1 mRNA upstream 432670 13864 ~ 18096 (+) True LOC118936272
XM_036934878.1 mRNA downstream 260954 714730 ~ 722393 (+) False zgc:110410
XM_036934871.1 mRNA downstream 261011 714787 ~ 722393 (+) True zgc:110410
XR_005034561.1 mRNA downstream 271015 724791 ~ 725975 (+) False LOC118937316
XM_036934927.1 mRNA downstream 406683 860459 ~ 871969 (+) False cmc1
XM_036934910.1 mRNA downstream 406683 860459 ~ 871976 (+) False cmc1
TU116509 other upstream 269744 174996 ~ 181022 (+) True G103851
TU116869 other downstream 236270 690046 ~ 701271 (+) True G104092
TU116937 other downstream 406730 860506 ~ 872515 (+) False cmc1
TU116938 other downstream 406730 860506 ~ 872515 (+) False cmc1
TU116939 other downstream 406730 860506 ~ 872515 (+) True cmc1
TU117843 other downstream 699285 1153061 ~ 1153749 (+) True G104761

Expression Profile