RNA id: TU116774


Basic Information

Item Value
RNA id TU116774
length 456
lncRNA type intronic
GC content 0.37
exon number 2
gene id G104044
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 582235 ~ 585015 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aattgcaggatattagctagcaacaacaacaacatatctctaccccatgacaaagtgtagaattacaggatattagctagcaacaacaacaTATCTCTctaccccatgacaaaatgtgtagaattgcaggatattagctagcaacaacaacatctctctacccccatgacaaaatgtgtagaattgcaggatattaactagcaacaacaacatctctctaccccattacaaaatgtgtagaattacaggatattagctagcaacaacaacatatctctaccccatgacaaaatgtgtagaattacaggatattagctagcaacaacaacaacatctctctaccccattacaaaatgtgtagaattgcaggatattagctagcaacaacaacaacatctctctaccccatgacaaaatgtgtagaattgcaggatattagctagcaacaacaacaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116762 lncRNA upstream 13685 568134 ~ 568550 (+) True G104033
TU116752 lncRNA upstream 31789 549708 ~ 550446 (+) False G104024
TU116753 lncRNA upstream 31789 549708 ~ 550446 (+) True G104024
TU116731 lncRNA upstream 73241 508715 ~ 508994 (+) True G104006
TU116725 lncRNA upstream 73613 506726 ~ 508622 (+) True G104005
TU116775 lncRNA downstream 568 583915 ~ 585015 (+) True G104044
TU116780 lncRNA downstream 3950 587297 ~ 587671 (+) True G104047
TU116783 lncRNA downstream 11010 594357 ~ 595015 (+) True G104049
TU116796 lncRNA downstream 20163 603510 ~ 603948 (+) True G104051
TU116809 lncRNA downstream 34960 618307 ~ 618853 (+) True G104060
XM_036934821.1 mRNA upstream 564139 13864 ~ 18096 (+) True LOC118936272
XM_036934878.1 mRNA downstream 131383 714730 ~ 722393 (+) False zgc:110410
XM_036934871.1 mRNA downstream 131440 714787 ~ 722393 (+) True zgc:110410
XR_005034561.1 mRNA downstream 141444 724791 ~ 725975 (+) False LOC118937316
XM_036934927.1 mRNA downstream 277112 860459 ~ 871969 (+) False cmc1
XM_036934910.1 mRNA downstream 277112 860459 ~ 871976 (+) False cmc1
TU116509 other upstream 401213 174996 ~ 181022 (+) True G103851
TU116869 other downstream 106699 690046 ~ 701271 (+) True G104092
TU116937 other downstream 277159 860506 ~ 872515 (+) False cmc1
TU116938 other downstream 277159 860506 ~ 872515 (+) False cmc1
TU116939 other downstream 277159 860506 ~ 872515 (+) True cmc1
TU117843 other downstream 569714 1153061 ~ 1153749 (+) True G104761

Expression Profile