RNA id: TU116809


Basic Information

Item Value
RNA id TU116809
length 411
lncRNA type intronic
GC content 0.37
exon number 3
gene id G104060
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 618307 ~ 618853 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accctattctctatgtagaacagtcctgttgacgaccctattctctatgtagaacagtccTGTTGAcgaccctattctctatgtagaacagtcctgttgacgaccctattctctatgtagaacagtcctgttgacgaccctattctctatgtagaaCAGTCCTGTTGACGACCCTGTTCTCTATGTAGAAcagtcctgttgACGACCCTACTCTCTAGGAATAGCTGGGTGCTGCTGCTCATCTGAACTCTgcttccatccctctatctctctctctctctctctctctctctctctcttggtctctctctctctctctctctctctctctctctctctctctctctctctgtctctctctctctctctctctgtgtctctctctctctctgtgtgtctctctctctctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116796 lncRNA upstream 14359 603510 ~ 603948 (+) True G104051
TU116783 lncRNA upstream 23292 594357 ~ 595015 (+) True G104049
TU116780 lncRNA upstream 30636 587297 ~ 587671 (+) True G104047
TU116776 lncRNA upstream 33292 582622 ~ 585015 (+) False G104044
TU116775 lncRNA upstream 33292 583915 ~ 585015 (+) True G104044
TU116818 lncRNA downstream 13921 632774 ~ 633339 (+) True G104067
TU116832 lncRNA downstream 21923 640776 ~ 643494 (+) True G104072
TU116485 lncRNA downstream 57161 676014 ~ 676375 (+) True G103840
TU116867 lncRNA downstream 70733 689586 ~ 689906 (+) True G104091
TU116881 lncRNA downstream 81018 699871 ~ 702351 (+) True G104102
XM_036934821.1 mRNA upstream 600211 13864 ~ 18096 (+) True LOC118936272
XM_036934878.1 mRNA downstream 95877 714730 ~ 722393 (+) False zgc:110410
XM_036934871.1 mRNA downstream 95934 714787 ~ 722393 (+) True zgc:110410
XR_005034561.1 mRNA downstream 105938 724791 ~ 725975 (+) False LOC118937316
XM_036934927.1 mRNA downstream 241606 860459 ~ 871969 (+) False cmc1
XM_036934910.1 mRNA downstream 241606 860459 ~ 871976 (+) False cmc1
TU116509 other upstream 437285 174996 ~ 181022 (+) True G103851
TU116869 other downstream 71193 690046 ~ 701271 (+) True G104092
TU116937 other downstream 241653 860506 ~ 872515 (+) False cmc1
TU116938 other downstream 241653 860506 ~ 872515 (+) False cmc1
TU116939 other downstream 241653 860506 ~ 872515 (+) True cmc1
TU117843 other downstream 534208 1153061 ~ 1153749 (+) True G104761

Expression Profile