RNA id: TU116867


Basic Information

Item Value
RNA id TU116867
length 321
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G104091
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 689586 ~ 689906 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATATATGATATGAAGCCAGTAGTATATATGACATAAAGCCAGTAGTATATATGACATAAAGCCAGTAGTATATATGACATAAAGCCAGTAGTATATATGACATACAGCCAGTAGTATATATGACATGAAGCCAGTAGTATATATGACATAAAGCCAGTAGTATATATGATATGAAGCCAGTAGTGTCTGTGATATGAAGCCAATAGTACCTGTAATATAAACCCAGTAGTATCTGTGACATAATGCCAGTAGTATCTGTGATATAAAACCAGTAGTGTCTGCTGTGACATAAAGCCAGTAGTATCTGTAATATAAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116485 lncRNA upstream 13211 676014 ~ 676375 (+) True G103840
TU116832 lncRNA upstream 46092 640776 ~ 643494 (+) True G104072
TU116818 lncRNA upstream 56247 632774 ~ 633339 (+) True G104067
TU116809 lncRNA upstream 70733 618307 ~ 618853 (+) True G104060
TU116796 lncRNA upstream 85638 603510 ~ 603948 (+) True G104051
TU116881 lncRNA downstream 9965 699871 ~ 702351 (+) True G104102
TU116851 lncRNA downstream 35755 725661 ~ 731551 (+) True LOC118937316
TU116885 lncRNA downstream 51056 740962 ~ 741553 (+) False G104106
TU116886 lncRNA downstream 51056 740962 ~ 741553 (+) True G104106
TU116892 lncRNA downstream 56490 746396 ~ 748276 (+) True G104111
XM_036934833.1 mRNA upstream 17392 149182 ~ 672194 (+) True LOC110512917
XM_036934821.1 mRNA upstream 671490 13864 ~ 18096 (+) True LOC118936272
XM_036934878.1 mRNA downstream 24824 714730 ~ 722393 (+) False zgc:110410
XM_036934871.1 mRNA downstream 24881 714787 ~ 722393 (+) True zgc:110410
XR_005034561.1 mRNA downstream 34885 724791 ~ 725975 (+) False LOC118937316
XM_036934927.1 mRNA downstream 170553 860459 ~ 871969 (+) False cmc1
XM_036934910.1 mRNA downstream 170553 860459 ~ 871976 (+) False cmc1
TU116509 other upstream 508564 174996 ~ 181022 (+) True G103851
TU116869 other downstream 140 690046 ~ 701271 (+) True G104092
TU116937 other downstream 170600 860506 ~ 872515 (+) False cmc1
TU116938 other downstream 170600 860506 ~ 872515 (+) False cmc1
TU116939 other downstream 170600 860506 ~ 872515 (+) True cmc1
TU117843 other downstream 463155 1153061 ~ 1153749 (+) True G104761

Expression Profile