RNA id: TU116892


Basic Information

Item Value
RNA id TU116892
length 546
lncRNA type antisense_over
GC content 0.52
exon number 3
gene id G104111
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 746396 ~ 748276 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGCACACTGCATGTGGTTGCAGCCTTCGTTCTTCTGAATAGGAGACTTGCAGTTGGCGCAGGGTTTGGCGTTGGACAGTAACCACAAGCAGTTGGCTGCATCTTCATAGGCTTCACTCACACCAGCCACTTCCCAGggggaaaaacaacaacacaacagacaGCTAACTGGACACGACTCATTCCACAGCATTCAGAGAGTGTTCCTACAacctacagagtgtgtgtgtgtgagagagagagagaaaagagagagacagaaagagagagagacagaaagagagagaaagagacagagagagaaagagacagagagagaaagaaagagagagaaagaaagtgtgagtgtgagtgtgagtgagagtgagagtgagagtgtgagtgtgtgagagagagagagagagacagaaagagagagagacagaaagagagagaaagagacagagagagaaagagacagagagagaaagaaagagagagaaagagagtgtgagtgtgagtgtgtgttggtgtgtgtgtgtgagtggtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116885 lncRNA upstream 4843 740962 ~ 741553 (+) False G104106
TU116886 lncRNA upstream 4843 740962 ~ 741553 (+) True G104106
TU116851 lncRNA upstream 14845 725661 ~ 731551 (+) True LOC118937316
TU116881 lncRNA upstream 44045 699871 ~ 702351 (+) True G104102
TU116867 lncRNA upstream 56490 689586 ~ 689906 (+) True G104091
TU116895 lncRNA downstream 5423 753699 ~ 754328 (+) True G104114
TU116897 lncRNA downstream 8510 756786 ~ 757552 (+) False G104116
TU116899 lncRNA downstream 8510 756786 ~ 757552 (+) False G104116
TU116900 lncRNA downstream 8510 756786 ~ 757552 (+) False G104116
TU116903 lncRNA downstream 8510 756786 ~ 757771 (+) True G104116
XR_005034561.1 mRNA upstream 20421 724791 ~ 725975 (+) False LOC118937316
XM_036934878.1 mRNA upstream 24003 714730 ~ 722393 (+) False zgc:110410
XM_036934871.1 mRNA upstream 24003 714787 ~ 722393 (+) True zgc:110410
XM_036934833.1 mRNA upstream 74202 149182 ~ 672194 (+) True LOC110512917
XM_036934821.1 mRNA upstream 728300 13864 ~ 18096 (+) True LOC118936272
XM_036934927.1 mRNA downstream 112183 860459 ~ 871969 (+) False cmc1
XM_036934910.1 mRNA downstream 112183 860459 ~ 871976 (+) False cmc1
XR_005034563.1 mRNA downstream 112183 860459 ~ 872514 (+) False cmc1
XM_036934922.1 mRNA downstream 112525 860801 ~ 871977 (+) False cmc1
XM_036934929.1 mRNA downstream 112604 860880 ~ 871969 (+) False cmc1
TU116869 other upstream 45125 690046 ~ 701271 (+) True G104092
TU116509 other upstream 565374 174996 ~ 181022 (+) True G103851
TU116937 other downstream 112230 860506 ~ 872515 (+) False cmc1
TU116938 other downstream 112230 860506 ~ 872515 (+) False cmc1
TU116939 other downstream 112230 860506 ~ 872515 (+) True cmc1
TU117843 other downstream 404785 1153061 ~ 1153749 (+) True G104761
TU118057 other downstream 561002 1309278 ~ 1352863 (+) True tgfbr2b

Expression Profile