RNA id: TU116903


Basic Information

Item Value
RNA id TU116903
length 680
lncRNA type antisense_over
GC content 0.54
exon number 2
gene id G104116
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 756786 ~ 757771 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTCCCCGGGGGAGAGGCTGATCTCGTCAGGGGAGGTGATGGAGGAGCGGGTGGTCCTGGGGGTACGAGGGGACGGCAGGGTGTCCCAGGCGTTGTGCCCACTAGGAGGAGCACTGGGCATGTGGACCCCAGACCGCTGGCAGCATTCCTCAGCGTTAGACATCCAGGCCTCCAGCAGgttctccctgtcccagtctacagCAGGAGAGATAGAAAACACTAGTTAGATCATATCCTTTACAGTCTACAGCAGGTTCTCTAGGTCCCAGTCTACAGCAGgttctctctgtcccagtctacAGCAGGTTCTCTAGGTCCTAGGTCCTCTAGGTCCCAGGAGGATCCTAGTACCTACTGAGTCAACGTGTGGGGGTaaaggttagtcaaggtcatttgcaAAGTGACCAGGcattgataataaacagcgagtagcagcagggtaaaaaggaaggaaggaaggaaggaaggaagaaaggaaggaaggaaggaagtaggtaagtaagtaagtaagtaagtaagtaagtaagtaggtaggtaggtaggcaggtgtgtgtgtgtggtccataCCATGTGCTCTAAGCAGAGCCTCAGCAGTAAAGAGAGGGGTCTGCAGCATGTCTGCCGTCTCCACTATCAGCATGTCCTTCAGACGACGCAGCTCCTGAGGCCTCAGACCCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116895 lncRNA upstream 2458 753699 ~ 754328 (+) True G104114
TU116892 lncRNA upstream 8510 746396 ~ 748276 (+) True G104111
TU116885 lncRNA upstream 15233 740962 ~ 741553 (+) False G104106
TU116886 lncRNA upstream 15233 740962 ~ 741553 (+) True G104106
TU116851 lncRNA upstream 25235 725661 ~ 731551 (+) True LOC118937316
TU116924 lncRNA downstream 20418 778189 ~ 779730 (+) True G104128
TU116941 lncRNA downstream 120288 878059 ~ 878664 (+) True G104138
TU116998 lncRNA downstream 129191 886962 ~ 896760 (+) False G104179
TU116999 lncRNA downstream 129191 886962 ~ 897406 (+) False G104179
TU116997 lncRNA downstream 136667 894438 ~ 896760 (+) False G104179
XR_005034561.1 mRNA upstream 30811 724791 ~ 725975 (+) False LOC118937316
XM_036934878.1 mRNA upstream 34393 714730 ~ 722393 (+) False zgc:110410
XM_036934871.1 mRNA upstream 34393 714787 ~ 722393 (+) True zgc:110410
XM_036934833.1 mRNA upstream 84592 149182 ~ 672194 (+) True LOC110512917
XM_036934821.1 mRNA upstream 738690 13864 ~ 18096 (+) True LOC118936272
XM_036934927.1 mRNA downstream 102688 860459 ~ 871969 (+) False cmc1
XM_036934910.1 mRNA downstream 102688 860459 ~ 871976 (+) False cmc1
XR_005034563.1 mRNA downstream 102688 860459 ~ 872514 (+) False cmc1
XM_036934922.1 mRNA downstream 103030 860801 ~ 871977 (+) False cmc1
XM_036934929.1 mRNA downstream 103109 860880 ~ 871969 (+) False cmc1
TU116869 other upstream 55515 690046 ~ 701271 (+) True G104092
TU116509 other upstream 575764 174996 ~ 181022 (+) True G103851
TU116937 other downstream 102735 860506 ~ 872515 (+) False cmc1
TU116938 other downstream 102735 860506 ~ 872515 (+) False cmc1
TU116939 other downstream 102735 860506 ~ 872515 (+) True cmc1
TU117843 other downstream 395290 1153061 ~ 1153749 (+) True G104761
TU118057 other downstream 551507 1309278 ~ 1352863 (+) True tgfbr2b

Expression Profile