RNA id: TU116924


Basic Information

Item Value
RNA id TU116924
length 338
lncRNA type intronic
GC content 0.38
exon number 2
gene id G104128
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 778189 ~ 779730 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTTAAACAGTTAAAAGGTGTTTTATATAGTTAAAAGGTGCTCCACACAGCATAACCATAGTGGTGAATAACTCCCATTTGAAAAGCCATTGAAAACAAAGAGGGGAAAACAATCCCCATTTCTAATACTTGACAAGTCATCTTTTAAAAACAATCCCCATTTCTAATACTTGACAAGTCATCTTTTAAAAACAATCCCCATTTCTAATACTTGACAAGTCATCTTTTAAAAACAATCCCCATTTCTAATACTTGACAAGTCATCTTTTAAAAACAATCCCCATTTCTAATACTTGACAAGTCATCTTTTAAAAACAATCCCCATTTCTAATACTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116903 lncRNA upstream 20418 756786 ~ 757771 (+) True G104116
TU116897 lncRNA upstream 20637 756786 ~ 757552 (+) False G104116
TU116899 lncRNA upstream 20637 756786 ~ 757552 (+) False G104116
TU116900 lncRNA upstream 20637 756786 ~ 757552 (+) False G104116
TU116895 lncRNA upstream 23861 753699 ~ 754328 (+) True G104114
TU116941 lncRNA downstream 98329 878059 ~ 878664 (+) True G104138
TU116998 lncRNA downstream 107232 886962 ~ 896760 (+) False G104179
TU116999 lncRNA downstream 107232 886962 ~ 897406 (+) False G104179
TU116997 lncRNA downstream 114708 894438 ~ 896760 (+) False G104179
TU117000 lncRNA downstream 117321 897051 ~ 897406 (+) True G104179
XR_005034561.1 mRNA upstream 52214 724791 ~ 725975 (+) False LOC118937316
XM_036934878.1 mRNA upstream 55796 714730 ~ 722393 (+) False zgc:110410
XM_036934871.1 mRNA upstream 55796 714787 ~ 722393 (+) True zgc:110410
XM_036934833.1 mRNA upstream 105995 149182 ~ 672194 (+) True LOC110512917
XM_036934821.1 mRNA upstream 760093 13864 ~ 18096 (+) True LOC118936272
XM_036934927.1 mRNA downstream 80729 860459 ~ 871969 (+) False cmc1
XM_036934910.1 mRNA downstream 80729 860459 ~ 871976 (+) False cmc1
XR_005034563.1 mRNA downstream 80729 860459 ~ 872514 (+) False cmc1
XM_036934922.1 mRNA downstream 81071 860801 ~ 871977 (+) False cmc1
XM_036934929.1 mRNA downstream 81150 860880 ~ 871969 (+) False cmc1
TU116869 other upstream 76918 690046 ~ 701271 (+) True G104092
TU116509 other upstream 597167 174996 ~ 181022 (+) True G103851
TU116937 other downstream 80776 860506 ~ 872515 (+) False cmc1
TU116938 other downstream 80776 860506 ~ 872515 (+) False cmc1
TU116939 other downstream 80776 860506 ~ 872515 (+) True cmc1
TU117843 other downstream 373331 1153061 ~ 1153749 (+) True G104761
TU118057 other downstream 529548 1309278 ~ 1352863 (+) True tgfbr2b

Expression Profile