XLOC_003844 (ddx19)


Basic Information

Item Value
gene id XLOC_003844
gene name ddx19
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3523358 ~ 3535581 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007379
AACCACGTTCTACTGAACTTGTTTCCGCACGGAGGTGTGAGACTCGCAACCCATAAGAAGCGAGGAAAGCCGCACGCCATTGTATGAATTTCTTGCTTTCAAGTCtgtttagtttcattttattAAGGATTTAAGTGCTGCTTGATTTTGAAATCTACTGTTACACAgaatacagtttttaaaataggcgttttactttaaaaagaagGACATGGCAACAGATTCGTGGGCCCAGGCTGTCGATGAACAAGAAGCTGCAGCGGAATCGATAAGCACCTTGCAAATAAGTGAAAAAGAGGAGAAGCCGACAGCTGAAGCAAATGGAGCGAAGACAGAAGCGAAGACCGAAGCAAAAACAGAAGCAAATGCTGATAAAACAGAGGAGGATGATAAAGATGACAAGGCAGCACAGTCACTGCTGAATAAACTGATACGCAGTAATCTAGTCAACACCACCAATCAAGTTGAAGTCCTTCAGAGGGATCCGAGCTCTCCGCTATACTCTGTCAAATCATTTGAAGAGCTGCGACTGAAACCTCAGCTATTGCAAGGAGTGTATGCCATGGGTTTTAATAGACCCTCCAAAATCCAGGAGACTGCATTGCCCATGATGCTCGCTGAAccTCCACAGAATCTGATCGCTCAGTCTCAGTCAGGAACAGGTAAAACGGCTGCCTTCGTGCTGGCCATGTTAAGTCACGTGGACCCTGAGAACAAATGGCCTCAGtgtctgtgtgtgtcccCCACATATGAGCTGGCCCTACAGACTGGGAAGGTCATCGAGCAGATGGGGAAACATTACCCTGAAGTCCAGCTAGTGTACGCCATCAGAGGAAACAAATTGGAGCGGGGTACAAAACTGCAGGAGCAGATCGTGATTGGCACTCCTGGTACTGTTCTGGATTGGTGCCAAAAGCTGAAATTCATCGATCCTAAGAAGATCAAGGTGTTTGTGTTGGACGAGGCTGACGTCATGATCGCCACACAGGGTCATCAAGACCAGAGCATTCGCATCCAGAGgATGCTTCCTAAAACTTGCCAGATGCTGTTGTTCTCTGCCACATTTGAAGAAACGGTGTGGAATTTCGCAAAGAGAATCGTTCCCGACCCCAACATTATCAAACTCAAGCGTGAAGAAGAGACTCTAGACTCCATCAAGCAGTATTATGTCATCTGCAACAGCAAGGAGGAGAAATTCCAGGCTTTGTGCAACATCTACGGAGCCATAACCATCGCACAGGCTATGATCTTCTGCCATACCAGGAAAACTGCCGGGTGGTTGGCAGGAGAGCTGTCCAGAGAAGGACACCAGGTGGCGCTGCTAAGTGGAGAGATGCAGGTGGAGCAGAGAGCAGCGGTCATTGAACGCTTCCGAGACGGCAAAGAGAAAGTCCTGGTTACCACTAACGTCTGTGCCAGAGGTATCGATGTGGAGCAAGTGTCAGTGGTGATCAACTTCGATCTGCCAGTGGACAAGGACGGCAACCCTGATAATGAGACGTATCTGCACCGAATTGGGCGTACTGGGCGATTCGGCAAAAGAGGGCTGGCGATCAACATGGTGGACAGCAAGTTTAGCATGAACATTCTCAACCGCATCCAAGACCACTTCAATAAGAAAATTGAGAAACTGGACACCGATGATTTGGATGAGATCGAGAAGATCGCCAACTGAGCGTCCGCCTGTGACGTTTACAATAGGACTGTGCTCACGCTACATTTTAATTCAGAGGCTGGAAGCAGAGCTGTGCCAGAGCGGATGTTTACATGTGGAGCAGTTTTATCTCAGATGGTGTTTTTATAggtcttttattttgtttcactCTTTGTACTTAATAAATGCTGAATGTGTAGTCTTAACGTCACGTCTACGAGAATCCTGCGGGAGCCGTCTGGGACACTGACAAGGAGAATATGCCTTTTCAAGATTAACCGTTACATCATGCACCTTTTTAAAATCGCCTgccttcaaaaaataaaaatcatgaacTCCTATATTGAGTTTTATCATGGAACTCCAAACCCAGAACGTTTAGTGGATCATCGTCTTTCATTCAAGTGTGTTCAtcgatattattattaattgttgcATTCAAGTACATATAGGTTTTGTTGACTCTTCCTAAAACGATCAATCTAAAGCAGGGTTTTCAACTGTATTAAATGAGATTTGTCATTGTTACACATTTTAATACCTCATTACAACCAGAAGTGAAAGTAAGCTCGCTCTTATTGGCTTCGAATTCAAGAGAAACCATCGCCAAAGTCCTGTTATTAATCTAAAATCATGCGAAAGCCAAAGATTTGTGCCTCCTATGGATTCGCTAGTACTTGACATCTAAAAACAAGCCTCTGTGTTTGTTTGTAGGAATATTATTGTCCATATTTAACAAGTACAAAGAGTGAAATGATCACTATATATTAAGCAGATGCAGTGTAATGAAGGTGGAGGATTTTCTGTAGCCGTTATGCGGTAGGAGACTGCACTGAATTGCAAACGATCAGGTTTAAGTATGTTAACGTATTTGTTCACGGTAAAGGCTGTGCTGCATTCCCATTTTCAGCCGCCTTCAAAACAGGCAGGGTAACCATCACGTAGGACTATTTTAGATTAGCCACTCTCAACTCAACAGGCACTGCACTCGGCTCCACTATATAtgcattttagacattttattcATTGGTGTGTGTGTTGTCGCAAGTATTTCAGTCGCGTCTTTTGAAGGGAAGACTTTCTAGATTGCTCAATATATCTCCTGATGCCTTGTCGGTTTAATTAAAGCTGTCAATTATACTTGACTTGTTATGATTATATTAAAGAGAGAGGTTTATATTTTTGGTTGtatgtaaaatctaaacaaagaCTGTCTAGTTGAAGCTAATTAACCTGGTGCTGCTTCAGATAATAAATGGACTTGTGGATATTATCAAACACATTCCTGCATTATTATGCTTTCGCTTTGTTTTTAAAGAGCGTAACTGAAATACTCATAATGCTCGAGGACAATTCGTTGCTGTTTTCACTTCATATACTGTCATGTTCACCTCAAAATGATGTGGTTTTCTTTGTCTagttgatgttttgtttttagagaaCATGCACTTCTTGCTGACAAATCAGCCTTTTGAAATGGATGATAATTCCTGGAGTTTCACCTCAGTTGAATGTTGACGACACACACAAAGTGTGCATCTTTTTAAAAGTGGTTTGTGTTGAGACGGACTATGATTGGATGTTACCGGATGAGGGAATGCTTGCGTTTGGGTCTTGGAGCAGCTCTCGGGTGTGCTGCATTCGTGCTGATGTTGGCGACTGAATGATGTATGATAGAATAAACCTATGAATCCAAGCGTG
>TCONS_00007380
AAAACAGAAGCAAATGCTGATAAAACAGAGGAGGATGATAAAGATGACAAGGCAGCACAGTCACTGCTGAATAAACTGATACGCAGTAATCTAGTCAACACCACCAATCAAGTTGAAGTCCTTCAGAGGGATCCGAGCTCTCCGCTATACTCTGTCAAATCATTTGAAGAGCTGCGACTGAAACCTCAGCTATTGCAAGGAGTGTATGCCATGGGTTTTAATAGACCCTCCAAAATCCAGGAGACTGCATTGCCCATGATGCTCGCTGAAccTCCACAGAATCTGATCGCTCAGTCTCAGTCAGGAACAGGTAAAACGGCTGCCTTCGGCTGGCGATCAACATGGTGGACAGCAAGTTTAGCATGAACATTCTCAACCGCATCCAAGACCACTTCAATAAGAAAATTGAGAAACTGGACACCGATGATTTGGATGAGATCGAGAAGATCGCCAACTGAGCGTCCGCCTGTGACGTTTACAATAGGACTGTGCTCACGCTACATTTTAATTCAGAGGCTGGAAGCAGAGCTGTGCCAGAGCGGATGTTTACATGTGGAGCAGTTTTATCTCAGATGGTGTTTTTATAggtcttttattttgtttcactCTTTGTACTTAATAAATGCTGAATGTGTAGTCTTAACGTCACGTCTACGAGAATCCTGCGGGAGCCGTCTGGGACACTGACAAGGAGAATATGCCTTTTCAAGATTAACCGTTACATCATGCACCTTTTTAAAATCGCCTgccttcaaaaaataaaaatcatgaacTCCTA
>TCONS_00007381
CGCAACCCATAAGAAGCGAGGAAAGCCGCACGCCATTaagGACATGGCAACAGATTCGTGGGCCCAGGCTGTCGATGAACAAGAAGCTGCAGCGGAATCGATAAGCACCTTGCAAATAAGTGAAAAAGAGGAGAAGCCGACAGCTGAAGCAAATGGAGCGAAGACAGAAGCGAAGACCGAAGCAAAAACAGAAGCAAATGCTGATAAAACAGAGGAGGATGATAAAGATGACAAGGCAGCACAGTCACTGCTGAATAAACTGATACGCAGTAATCTAGTCAACACCACCAATCAAGTTGAAGTCCTTCAGAGGGATCCGAGCTCTCCGCTATACTCTGTCAAATCATTTGAAGAGCTGCGACTGAAACCTCAGCTATTGCAAGGAGTGTATGCCATGGGTTTTAATAGACCCTCCAAAATCCAGGAGACTGCATTGCCCATGATGCTCGCTGAAccTCCACAGAATCTGATCGCTCAGTCTCAGTCAGGAACAGGTAAAACGGCTGCCTTCGTGCTGGCCATGTTAAGTCACGTGGACCCTGAGAACAAATGGCCTCAGtgtctgtgtgtgtcccCCACATATGAGCTGGCCCTACAGACTGGGAAGGTCATCGAGCAGATGGGGAAACATTACCCTGAAGTCCAGCTAGTGTACGCCATCAGAGGAAACAAATTGGAGCGGGGTACAAAACTGCAGGAGCAGATCGTGATTGGCACTCCTGGTACTGTTCTGGATTGGTGCCAAAAGCTGAAATTCATCGATCCTAAGAAGATCAAGGTGTTTGTGTTGGACGAGGCTGACGTCATGATCG

Function

symbol description
ddx19 Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be active in cytoplasmic stress granule and nucleus. Orthologous to human DDX19A (DEAD-box helicase 19A) and DDX19B (DEAD-box helicase 19B).

GO:

id name namespace
GO:0016973 poly(A)+ mRNA export from nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0010494 cytoplasmic stress granule cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003724 RNA helicase activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03015 mRNA surveillance pathway
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-020419-30 Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be active in cytoplasmic stress granule and nucleus. Orthologous to human DDX19A (DEAD-box helicase 19A) and DDX19B (DEAD-box helicase 19B).

Ensembl:

ensembl_id ENSDARG00000005699

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007379 False 3355 mRNA 0.43 12 3523358 3535581
TCONS_00007380 False 778 mRNA 0.44 6 3524718 3533356
TCONS_00007381 True 812 mRNA 0.49 9 3530391 3535537

Neighbor

gene id symbol gene type direction distance location
XLOC_003843 NA coding downstream 28394 3385104 ~ 3494964 (-)
XLOC_003842 suox coding downstream 142015 3345405 ~ 3381343 (-)
XLOC_003841 tuba2 coding downstream 179895 3336524 ~ 3343463 (-)
XLOC_003840 prph coding downstream 189108 3320598 ~ 3334250 (-)
XLOC_003839 cdk2 coding downstream 214789 3301277 ~ 3308569 (-)
XLOC_003845 CAMK2N1 coding upstream 14789 3550370 ~ 3552067 (-)
XLOC_003846 si:dkey-33m11.7 coding upstream 27510 3563091 ~ 3574311 (-)
XLOC_003847 dnajc16l coding upstream 57546 3593127 ~ 3613558 (-)
XLOC_003848 itih3a coding upstream 78745 3614326 ~ 3629216 (-)
XLOC_003849 itih1 coding upstream 95046 3630627 ~ 3647014 (-)
XLOC_003938 BX324177.10 misc upstream 7803223 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 7832013 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 7834874 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 7845323 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 7848252 11383833 ~ 11384130 (-)
XLOC_003838 NA non-coding downstream 540976 2976603 ~ 2982382 (-)
XLOC_003837 NA non-coding downstream 679475 2842098 ~ 2843883 (-)
XLOC_003835 NA non-coding downstream 762992 2756893 ~ 2760366 (-)
XLOC_003826 NA non-coding downstream 1074844 2446641 ~ 2448514 (-)
XLOC_003853 CR450797.1 non-coding upstream 418142 3953723 ~ 3953837 (-)
XLOC_003858 BX248331.2 non-coding upstream 651441 4187022 ~ 4194697 (-)
XLOC_003860 NA non-coding upstream 728467 4264048 ~ 4281694 (-)
XLOC_003862 BX248331.4 non-coding upstream 751049 4286630 ~ 4290096 (-)
XLOC_003864 CT033790.2 non-coding upstream 763510 4299091 ~ 4302567 (-)

Expression


Co-expression Network