RNA id: TCONS_00007374


Basic Information

Item Value
RNA id TCONS_00007374
length 414
lncRNA type retained_intron
GC content 0.46
exon number 3
gene id XLOC_003842
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3345405 ~ 3381343 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGAAGAAGAAAAGGAGGATCTGTGGATCTACATCGCGAGCTCATGGAGTTTTCTGCTTCACCGGGGACTGAAGTTTAATTGCAAAAGTACAATGCAGCGCCTAAAGCCTTCTCAAGGTCTTTCACAGCTCCTCCTTATCAGAAGTCAAAGTTCCAGGATTTCAAAGGGCATTATCCCGCTGTTGTCCGTGTGGGATGGGCATCTGTCCTCTCGCTGGCGGAGCACTGGTGGTCATGGAGGGCagaaatactttaataataatgggCAGAAGTTTCGATTTGCTCTGGCAGGGCTGCTGGCCGGTACTGGGGCTGTTCTGGCCTATAAGCTCCACCAAAGCAAGGTGAGACTTGTTTGctaattcaattaattaaatcaCTCTAGGCAAATAAAGAGGATTTTTGTTTTTAAGC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006790 sulfur compound metabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0043546 molybdopterin cofactor binding molecular_function
GO:0030151 molybdenum ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008482 sulfite oxidase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
ko00920 Sulfur metabolism

ZFIN:

id description
ZDB-GENE-070718-3 Predicted to enable heme binding activity; molybdopterin cofactor binding activity; and sulfite oxidase activity. Predicted to be involved in sulfur compound metabolic process. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in inherited metabolic disorder and isolated sulfite oxidase deficiency. Orthologous to human SUOX (sulfite oxidase).

Ensembl:

ensembl_id ENSDART00000154530

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007372 lncRNA downstream 9483 3340299 ~ 3341687 (-) True XLOC_003841
TCONS_00007368 lncRNA downstream 42708 3304551 ~ 3308462 (-) True XLOC_003839
TCONS_00008738 lncRNA downstream 368788 2976603 ~ 2982382 (-) True XLOC_003838
TCONS_00008737 lncRNA downstream 368789 2976603 ~ 2982381 (-) False XLOC_003838
TCONS_00008443 lncRNA downstream 507287 2842098 ~ 2843883 (-) True XLOC_003837
TCONS_00007377 lncRNA upstream 3871 3370355 ~ 3372027 (-) True XLOC_003842
TCONS_00008739 lncRNA upstream 18620 3385104 ~ 3494964 (-) False XLOC_003843
TCONS_00008740 lncRNA upstream 183887 3550371 ~ 3552067 (-) True XLOC_003845
TCONS_00007386 lncRNA upstream 235696 3602180 ~ 3604827 (-) True XLOC_003847
TCONS_00007389 lncRNA upstream 258637 3625121 ~ 3629188 (-) True XLOC_003848
TCONS_00007371 mRNA downstream 7707 3336524 ~ 3343463 (-) False XLOC_003841
TCONS_00007370 mRNA downstream 16920 3321123 ~ 3334250 (-) True XLOC_003840
TCONS_00007369 mRNA downstream 16922 3320598 ~ 3334248 (-) False XLOC_003840
TCONS_00007367 mRNA downstream 42601 3301277 ~ 3308569 (-) False XLOC_003839
TCONS_00007365 mRNA downstream 512471 2829812 ~ 2838699 (-) False XLOC_003836
TCONS_00007376 mRNA upstream 797 3367281 ~ 3381343 (-) False XLOC_003842
TCONS_00007378 mRNA upstream 18622 3385106 ~ 3494964 (-) True XLOC_003843
TCONS_00007379 mRNA upstream 156874 3523358 ~ 3535581 (-) False XLOC_003844
TCONS_00007380 mRNA upstream 158234 3524718 ~ 3533356 (-) False XLOC_003844
TCONS_00007381 mRNA upstream 163907 3530391 ~ 3535537 (-) True XLOC_003844
TCONS_00007330 other downstream 2262655 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 2371422 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 2891240 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 2999469 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 587239 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 2705476 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 2830792 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 3414224 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 3577816 6944300 ~ 6948018 (-) False XLOC_003898

Expression Profile

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