RNA id: TCONS_00007376


Basic Information

Item Value
RNA id TCONS_00007376
length 2289
RNA type mRNA
GC content 0.46
exon number 15
gene id XLOC_003842
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3345405 ~ 3381343 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTCAGGAGCATTTCCGGTGTACACCGGAAACTCTCCAAACTCAACACAAGCTTTCAGTTAGCTTAGCTTCATCGCTTTGTTGTTATTAGTCATGTATCTAGGCTAActgttaatttaaaatttattcgAAGTCTAATCTCACCGAAACTCATTCTAAAGTATTCATGATTCATCTGCATTCTGACTGTTAAACCGCTGATCTGGAGATCATGGAGAAAGATGTAAAGGCGGTTGTTCCGTCTGCTGTGGGTGCAGGATCGTCAGTCGGGCCGATGGTTTCACAGAGCAGGTCAGAGGACGAGCAGTCGGCCGCTGTGAAGAGAAGTGCTGCTCAGGCCTTCAGCGGAGCAGGGCTGATCCCCAAACGCCGGAGCTCCTCTAGATCAATAAAGAGAAAGAAGTTTGATGATGAACTGGTTGAAAGTAGCCTCGCAAAATCTACCACTCGGGTCAAAGGCCAGCCAGTTATTGAGCCAATCAGATGCCCTGGGAGTGACCTCATGTCCAGCGACAAGAAAAAGGGTTTGAAGTCTGCTAGCTCTCTGACGCCGCCTCTTACCATGGTGATCGCTCCTTCATCGATGACTAAACGCATGAAAAAGAACAAGCAGCCGCTGCAGATCACCAAAGACCTGGGCCGCTGGAAGCCCACCGATGACCTGCTGCTCATCAATGCTGTCTTACAGACCACAGATCTGACATCAGTTCATCTGGGGGTGAAGTTCAGCTGTCGCTTTACGCTGCGGGAGATCCAGGAGCGATGGTACGCTCTGCTGTACGATCCTGTCATATCAAAGCTCGCGTGGCAGGCCATGAGACAGCTCCATCCAGAGGCCATCGCAGCCATTCAGAGTAAAGCTCTTTTCAGTCAGGCGGAAGAAGCCCTGCTCGCCAAGATCACCTCAAACAGTCAGCCGAAGCTGGACGTCTTTCAGGATTTGCTGAACAAGCACCCAAATGTGTTTTACCCATCACGCACTGCTAAGAACCTGCTGGTGCACTGGCAGCTCCTGAAGCAGTACTATTTACTGGAGGATCAGAGCGTTCAGCCCCTGCCTAAAGGAGAGCAGGTGCTCAACTTTTCTGATGCGGAGCAGGTGGTTGATGATGCCAAACTCAAGGACAGCAGAGATGAAGTCTTAGAGCACGAGCTGATGATCGCAGACCGACACCAGAAGCGTGAGATCAGACAGCTGGAGCAGGAGCTTCCTCGCTGGCAGGTGTTAGTGGACAGTATCACAGGCATGAACTCACCGGACTTTGATAATCAGACGCTGGCAGCTTTGCGTGGACGAATGGTCCGATATCTGATGAGATCCAGAGAGATCACACTTGGCCGTGCTACTAAAGACAAGCAGATAGATGTCGATCTGTCTTTGGAAGGACCGGCATGGAAGATCTCCAGAAAACAAGGAATcattaaactgaaaaataatGGAGATTTCTTCATTGCCAATGAAGGCCGGAGGCCTATTTATATCGATGGACGACCAGTTTTATCTGGAAACAAGTGGAAACTCAATAACAACTCTGTGATGGAAATTGCAGGTCTACGCTTTGTGTTTCTGATCAATCAGGAGTTGATTTCTCTCATTAAAGCTGAAGCTGCGAAGATGAACCAGCCGTGATGGAAAAAACCCACCACTTCACTTTCCATTAAATCTGTAAACGAGACAGGAGATGAACTGTAATATCTCTTTACCTCTGACCAGAAGAAGAAGACCTTCAGCACAGCAAACAACTGAGCCCAGATCTGTTCACAGTGGAGGAAAACCAGGCAGAGAGTCAATATGCCGGTCACTAAAGGCTCATTCAGACAGAAAGATGTGTGTGGGGTAGGATTGTTGTTTTCAGGTCGTGTGTTTTGTTAAATTGTATATTTGGGTTTGTTTGTAATTAAATCTCAGTTAAGCTTGTATTGTCCGATATAAGACAGTATGCTAATATTCTGCCAAGACAGAACTAGTGTAAATATATTCATGGATTAAAACAGAGCAGTGTTTTAACAGTGGTGTTGTTCTTTGTGGTTCTGTTTGATTTCAGCAACATGGTAAGTGTTTAGAGTAAAAAGCTGATTTTCTTACGCTGTGTAATTTTATTCTGCCTGAattgctaacggtctaatccgattcaattcgATATGCTAAGCTAAGTCAAAAGTGAGcacaccagaagaaaaaatcagATGAATGAATTCCAAAATGGTCAACAATTGTTGTTCTTCATGGTTCTGTTTGATTTCAGCAACATGTTAGGACTTTTTAGAGTAAAAAGAGCTGATTCTCGTg

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006790 sulfur compound metabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0043546 molybdopterin cofactor binding molecular_function
GO:0030151 molybdenum ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008482 sulfite oxidase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
ko00920 Sulfur metabolism

ZFIN:

id description
ZDB-GENE-040426-2434 Predicted to enable G-quadruplex RNA binding activity. Acts upstream of or within cilium assembly and retina layer formation. Predicted to be part of NSL complex. Is expressed in brain; eye; pronephros; and spinal cord. Orthologous to human MCRS1 (microspherule protein 1).

Ensembl:

ensembl_id ENSDART00000002545

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007374 lncRNA downstream 797 3351170 ~ 3366484 (-) False XLOC_003842
TCONS_00007372 lncRNA downstream 25594 3340299 ~ 3341687 (-) True XLOC_003841
TCONS_00007368 lncRNA downstream 58819 3304551 ~ 3308462 (-) True XLOC_003839
TCONS_00008738 lncRNA downstream 384899 2976603 ~ 2982382 (-) True XLOC_003838
TCONS_00008737 lncRNA downstream 384900 2976603 ~ 2982381 (-) False XLOC_003838
TCONS_00008739 lncRNA upstream 3761 3385104 ~ 3494964 (-) False XLOC_003843
TCONS_00008740 lncRNA upstream 169028 3550371 ~ 3552067 (-) True XLOC_003845
TCONS_00007386 lncRNA upstream 220837 3602180 ~ 3604827 (-) True XLOC_003847
TCONS_00007389 lncRNA upstream 243778 3625121 ~ 3629188 (-) True XLOC_003848
TCONS_00007402 lncRNA upstream 593600 3974943 ~ 3984481 (-) False XLOC_003854
TCONS_00007373 mRNA downstream 499 3345405 ~ 3366782 (-) False XLOC_003842
TCONS_00007371 mRNA downstream 23818 3336524 ~ 3343463 (-) False XLOC_003841
TCONS_00007370 mRNA downstream 33031 3321123 ~ 3334250 (-) True XLOC_003840
TCONS_00007369 mRNA downstream 33033 3320598 ~ 3334248 (-) False XLOC_003840
TCONS_00007367 mRNA downstream 58712 3301277 ~ 3308569 (-) False XLOC_003839
TCONS_00007378 mRNA upstream 3763 3385106 ~ 3494964 (-) True XLOC_003843
TCONS_00007379 mRNA upstream 142015 3523358 ~ 3535581 (-) False XLOC_003844
TCONS_00007380 mRNA upstream 143375 3524718 ~ 3533356 (-) False XLOC_003844
TCONS_00007381 mRNA upstream 149048 3530391 ~ 3535537 (-) True XLOC_003844
TCONS_00007382 mRNA upstream 169027 3550370 ~ 3552067 (-) False XLOC_003845
TCONS_00007330 other downstream 2278766 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 2387533 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 2907351 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 3015580 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 572380 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 2690617 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 2815933 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 3399365 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 3562957 6944300 ~ 6948018 (-) False XLOC_003898

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000056_01941102_01951921.mRNA True 2040 mRNA 0.45 13 CI01000056 1940471 ~ 1951921 (-)
bowfin (Amia calva) AMCG00008653 True 2640 mRNA 0.50 14 CM030126.1 8021668 ~ 8036234 (+)