RNA id: TCONS_00007367


Basic Information

Item Value
RNA id TCONS_00007367
length 1734
RNA type mRNA
GC content 0.43
exon number 7
gene id XLOC_003839
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3301277 ~ 3308569 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGAGGGGCTTGTTCATTCGCTCAATTCATTGGTTTAGAATGTTGAATTGTATTCATGAGGCGGGGCTCGTTTTTACGCTTTGTTGCGAGGGCGTGCTGTATGAAACGCGGGAACTGGCGGCGGTATTGATATTAAGTTCTGACAAGAGTTTCAGTCGCCCGTTTTAACGtatcaaataaacaattttaatgtttttgatcGCCGGTTTGCATCGAATAGCACTTTCTCTGCACAGCTGCTCTTTTAAATAGATCCAGAGTGACGGTTTTCCCCGGAAAAGGGGCACTTTTGACATGGAGTCTTTTCAGAAAGTGGAGAAGATCGGAGAGGGAACATACGGAGTGGTTTATAAAGCCAAAAATAAAGTTACAGGAGAAACTGTCGCGCTGAAGAAAATCCGATTAGATACggaAACTGAAGGTGTTCCCAGCACTGCCATTCGTGAGATCTCTCTGCTAAAAGAGCTCAATCACCCTAACATAGTCAAGTTGCGTGATGTGATACACActgaaaataaactttacttGGTGTTTGAGTTTCTTCACCAAGACCTGAAGAGGTTTATGGACTCGACGTCTGTCAGTGGCATATCCTTGCCACTCGTGAAGagtTACCTATTCCAGCTGCTCCAGGGATTGGCCTTCTGTCACTCCCATCGGGTTCTTCACAGAGATCTTAAACCCCAGAATCTCCTCATCAACGCTCAGGGCGAGATCAAACTGGCTGACTTTGGTTTGGCCAGAGCGTTCGGTGTACCTGTGCGGACTTATACACATGAGGTTGTAACTTTGTGGTACAGAGCTCCAGAGATTCTCCTGGGATGTAAATATTATTCTACAGCTGTTGACATCTGGAGTTTGGGCTGCATCTTTGCTGAAATgATTACTCGGAGGGCACTGTTTCCTGGAGACTCTGAAATAGATCAGCTCTTCCGGATATTTCGAACTCTGGGCACTCCTGATGAGTCTATATGGCCTGGAGTTACATCAATGCCAGACTACAAACCCTCCTTTCCCAAATGGGCTCGACAGGACCTGTCTAAAGTGGTGCCCCCCCTTGATGAAGATGGCAGAGACCTTCTCGGGcaaATGTTGACCTATGATCCAAACAAGAGGATCTCGGCAAAGAACGCTCTTGTTCATCGGTTTTTCCGCGACGTCACCATGCCAGTGCCTCCTTTACGCCTATAAAACGAGATCAACTTTGGCAAGACGGGACTAAAAGTTTCACACAAAACTTTTCTGAAAATGATTTCCCAGTTTGGAAATCGTTCGGTTTTATAATCGATTTGTACGCTCGTTTTCCTAAAGTCACTCTGGGTTTGTTTTAATCTGAAGATTATCCATTGCAACCTGtcactggaaaaaaaacagctgtgCTAATAGTATGCGTGTGATTAAAATGACTCGGAGGATGTAAATTTGCATAAAGCAGACGTGATGTTACTAACATAACTTTAGTTCGGAGATGACATTCCATGGTTATATTGCTGATATAACTTGTGACGTTGTATTGCTTATATCACACAAGTACATATCGCATTGAGCGCTTCGTCTAGCCTTAGACTGAATGAAACTGTTTAGACTCCCTGTATCTTTTTGCTGCTTTATTCCaagattatattattataattaaagattttaaacctaatttgcttttaaagtttCCTAAAAATAGTTCTCTCTGCATCTTCATCCATTAAACTCGTATAACATTTGGTTTATGTTGTTACA

Function

GO:

id name namespace
GO:0010389 regulation of G2/M transition of mitotic cell cycle biological_process
GO:0000082 G1/S transition of mitotic cell cycle biological_process
GO:0006468 protein phosphorylation biological_process
GO:0010468 regulation of gene expression biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0016310 phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0000307 cyclin-dependent protein kinase holoenzyme complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004693 cyclin-dependent protein serine/threonine kinase activity molecular_function
GO:0030332 cyclin binding molecular_function

KEGG:

id description
ko04068 FoxO signaling pathway
ko04151 PI3K-Akt signaling pathway
ko04110 Cell cycle
ko04114 Oocyte meiosis
ko04115 p53 signaling pathway
ko04218 Cellular senescence
ko04914 Progesterone-mediated oocyte maturation
ko05200 Pathways in cancer
ko05203 Viral carcinogenesis
ko05226 Gastric cancer
ko05215 Prostate cancer
ko05222 Small cell lung cancer
ko05166 Human T-cell leukemia virus 1 infection
ko05161 Hepatitis B
ko05160 Hepatitis C
ko05162 Measles
ko05169 Epstein-Barr virus infection
ko05165 Human papillomavirus infection
ko04934 Cushing syndrome
ko01001 Protein kinases
ko03032 DNA replication proteins
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-2741 Predicted to enable cyclin binding activity and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in several processes, including G1/S transition of mitotic cell cycle; protein phosphorylation; and regulation of G2/M transition of mitotic cell cycle. Predicted to act upstream of or within phosphorylation. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in cytoplasm and nucleus. Is expressed in nervous system and pharyngeal arch 3-7 skeleton. Human ortholog(s) of this gene implicated in prostate cancer and renal cell carcinoma. Orthologous to human CDK2 (cyclin dependent kinase 2).

Ensembl:

ensembl_id ENSDART00000036581

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008738 lncRNA downstream 318895 2976603 ~ 2982382 (-) True XLOC_003838
TCONS_00008737 lncRNA downstream 318896 2976603 ~ 2982381 (-) False XLOC_003838
TCONS_00008443 lncRNA downstream 457394 2842098 ~ 2843883 (-) True XLOC_003837
TCONS_00008736 lncRNA downstream 540911 2756893 ~ 2760366 (-) True XLOC_003835
TCONS_00007363 lncRNA downstream 673140 2625032 ~ 2628137 (-) True XLOC_003833
TCONS_00007372 lncRNA upstream 31730 3340299 ~ 3341687 (-) True XLOC_003841
TCONS_00007374 lncRNA upstream 42601 3351170 ~ 3366484 (-) False XLOC_003842
TCONS_00007377 lncRNA upstream 61786 3370355 ~ 3372027 (-) True XLOC_003842
TCONS_00008739 lncRNA upstream 76535 3385104 ~ 3494964 (-) False XLOC_003843
TCONS_00008740 lncRNA upstream 241802 3550371 ~ 3552067 (-) True XLOC_003845
TCONS_00007365 mRNA downstream 462578 2829812 ~ 2838699 (-) False XLOC_003836
TCONS_00007366 mRNA downstream 464121 2832751 ~ 2837156 (-) True XLOC_003836
TCONS_00007364 mRNA downstream 600880 2691243 ~ 2700397 (-) True XLOC_003834
TCONS_00007362 mRNA downstream 668530 2616816 ~ 2632747 (-) False XLOC_003833
TCONS_00007361 mRNA downstream 707232 2571486 ~ 2594045 (-) True XLOC_003832
TCONS_00007369 mRNA upstream 12029 3320598 ~ 3334248 (-) False XLOC_003840
TCONS_00007370 mRNA upstream 12554 3321123 ~ 3334250 (-) True XLOC_003840
TCONS_00007371 mRNA upstream 27955 3336524 ~ 3343463 (-) False XLOC_003841
TCONS_00007373 mRNA upstream 36836 3345405 ~ 3366782 (-) False XLOC_003842
TCONS_00007375 mRNA upstream 55624 3364193 ~ 3380959 (-) False XLOC_003842
TCONS_00007330 other downstream 2212762 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 2321529 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 2841347 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 2949576 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 645154 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 2763391 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 2888707 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 3472139 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 3635731 6944300 ~ 6948018 (-) False XLOC_003898

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU276760 True 674 lncRNA 0.42 5 CI01000057 2200992 ~ 2207673 (+)