XLOC_003834 (si:ch211-160o17.6)


Basic Information

Item Value
gene id XLOC_003834
gene name si:ch211-160o17.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2691243 ~ 2700397 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007364
TTTAACAGCAATAATACACTATTTTGAAGTTAGCAAAGGAGATCAATAAGACTGCTAACGCGGCTTCATAACGCCTATTTCATATCTagacaaacatttttattcagaaaGAAGTAAGTTACGTTATAAACGTTTACAGTGAAGATGAAGTTAAAAGCAGCTGCGGACATTGTGTTACTCAGGTACATCTAATGGCATTACAGCGGCGGAGCAACAGGTTTACCTTTAAGAGTCTCTCTGTGCTGATTTCTGCACTCCAGCATGCTGTTATATTACCAGACACAGGTTATTTCACAAAGAATGGCGCACAAGGACCAGAGAAAAGAGAgcttcagcagtgtgttttatcAGACCAATGAAGGCCAAGACGGTCTGATCCGTCCGAAGAAACTGACCAACCCAGTGCTGGAGTCCTGCAGCCGGAGAGGATTACACCGTGAGCTCATCATCAGCCACAGATGTGGTCTTCTGCCTGAAGAGAAGCCGGAGCTGAAGCGAGTGCTGGAACATAGGAGACTGGAGCAAAACAGAGACCAAGAACAAGCCTCACAGTCGCCGTCTGACCTGGAGAAAGAGCTGAGCAAGAGACGCCAGATACTGCAGGCGTATGAGCAAGAAGAGCTGAGACGCAGAGAGGACCTACGAAACATGCCGGAGTTTGTTCGAGTGCGAGAGAACCTGAGGCACATCAGCATCACAGGCTACTGAATCCACGATCATGATCCATTTCCTCAAAGCGCTTCTATAAGGAACTGATTTTTGTGACTCACTGTCAAAATTGTGTTCAGTCCACATGAaataataaagtgcaaaaaaaaaacttttcaatcaCCATTCTGGGGGAACACGGcagctaagtggttagcactatcgcctcacagcaagaaggttgctggttcgagtcccagctgggtcagttggcatttctgtgtggagtttgcatgttctccccgtgttggcgtgggtttcctctgtgtgctctggtttgccccacagtccaaacacatgcgctataggggaattgaataaactaaattgtctgtagtgtatgagtgtgtatgaatgtttcccagtactggaagggaattcgctgtttaaaacatatgctggataagttggcggttcattccgctgtggcgaccccagattaataaagggactaagccgaaggaaattgaatgaaggaatgaacagTCAGTCAATGCTATCTGGCCCTAGTCATGAGCAAGTGTTTCTTTAGGAACTaacattatacagtatttttatgttgctttatttaaataagttaataaagtttttctttattaagtttaacttaatattattagtcaattagattattaaagttgagatgactaaaaaATCAGaagatttaaagggcacatatgataaaaaaattgacttttgtaagctgtttggacagaactgggCTATAGTATGTGCTCTGTCCTATTAGAGTGATAGAAACACTACAAGTCTCGTTTAATagaatttcctgacattaaaataggatccaaatatCAGTGaatttgaggcccaccacaacacgATGTAGGAGTGCGTTTttttccctgcccaccaaatCGATTGGCAGACGctatgtttctataataacatgtatacatggccacagaacatttttgttcagcaaatAAACTGGGATCAAAATATCTGTTGAACTCTCTGTGATTTacgttttataagtttaaaacgtttttaaaaccgagcatgtttgtaataaagacgcTGGTATTaaaatacaagatgtgcagcacctgaaactactgATACTGGAAGCCTTtactggcatttctcctgcggtgttgctatcagtgtgtgaagagtgggagaagaggcttgcattgacaatccaacacaatgggcagcacaatgaacacattttataagtgatcagaaacttgtaaataactcatgaaagaataaagttacgttaaaaccaa

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-141215-39 No description available

Ensembl:

ensembl_id ENSDARG00000059399

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007364 True 1961 mRNA 0.41 6 2691243 2700397

Neighbor

gene id symbol gene type direction distance location
XLOC_003833 si:ch211-160o17.2 coding downstream 58496 2616816 ~ 2632747 (-)
XLOC_003832 nab2 coding downstream 97198 2571486 ~ 2594045 (-)
XLOC_003831 cnpy2 coding downstream 142103 2540139 ~ 2549140 (-)
XLOC_003830 dgkab coding downstream 186493 2480293 ~ 2504750 (-)
XLOC_003829 si:ch73-267c23.10 coding downstream 212869 2471382 ~ 2478374 (-)
XLOC_003835 NA coding upstream 56496 2756893 ~ 2760366 (-)
XLOC_003836 lhfpl5a coding upstream 129415 2829812 ~ 2838699 (-)
XLOC_003837 NA coding upstream 141701 2842098 ~ 2843883 (-)
XLOC_003838 NA coding upstream 276206 2976603 ~ 2982382 (-)
XLOC_003839 cdk2 coding upstream 600880 3301277 ~ 3308569 (-)
XLOC_003938 BX324177.10 misc upstream 8638407 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 8667197 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 8670058 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 8680507 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 8683436 11383833 ~ 11384130 (-)
XLOC_003826 NA non-coding downstream 242729 2446641 ~ 2448514 (-)
XLOC_003825 NA non-coding downstream 375030 2315496 ~ 2316213 (-)
XLOC_003821 NA non-coding downstream 468803 2211065 ~ 2222440 (-)
XLOC_003817 NA non-coding downstream 770722 1915963 ~ 1920521 (-)
XLOC_003816 NA non-coding downstream 775789 1911551 ~ 1915454 (-)
XLOC_003843 NA non-coding upstream 684707 3385104 ~ 3494964 (-)
XLOC_003853 CR450797.1 non-coding upstream 1253326 3953723 ~ 3953837 (-)

Expression


Co-expression Network