XLOC_003836 (lhfpl5a)


Basic Information

Item Value
gene id XLOC_003836
gene name lhfpl5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2829812 ~ 2838699 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007365
CTCTCTCTTCAGCCACATCTGATGGAGGAAACAGCGGACAACTGCTGTCCTGCAGAAGGAGACACGGATCACTACAGTAAGTCAGAGCAGAATTATTCAGAAAGAAGACACTTCTCATCAAtattggTGCATAGACTCAAGGAGGACATCCGGCAGAATTAATCACAGCAATCAAGACACGACAACAAAAGCGTTTCTAACATCAGCACATTAATTTACCACTCACCTCCGGGGTGGACCATCATCTCCAGCAAACATGGCGAAAATGCTATCTGCCCAAGAGGCTGCCAAGATCTACCACACAAACTACGTGAGGAACGCGCGGGCCGTCGGCGTCCTGTGGACCATCTTCACCATCTGCTTCGCCATCATCGGTATGGTGGTCTTCATCCAGCCCTACTGGATCGGAGACAGCGTGGACACCCCCCAGTCTGGATACTTTGGCCTGTTCCACTACTGCATTGGGAATCCCATCACTGGAGAGCTGGTCTGTAAAGGCAGTGCTCTGGATTTCGGATCCATCCCTTCGGGCGCCTTCAAAACCGCCATGTTCTTCGTTGGCATCTCTTTGCTGCTGATCGTGGGCACCATTGTCTGCTTCAGTCTGTTCTTCTTCTGCAACTCGGGCAGTGTTTATAAGATCTGCGCGTGGATGCAGTTGGCAGCTGCGACGTGCATGGTCATCGGCTGTATGATCTATCCAGACGGCTGGGACTCAGAGGAGGTGAAGCGGATGTGTGGTCAGCGGACAGACAAATACACGCTGGGCAACTGTACGGTGCGCTGGGCTTACATCCTGGCCATCATCAGCATCATGGATTCCCTCACATTATCCTTCCTGGCCTTTGTGTTGGGCAACCGGCAGGACAAACTGCTGCCAGAGGACTTCCAGGAGGAGAAGAAAGagGAAGCATGAAGATCCCTGCACATCCTCAGACTCAATGGACTCTGGCTTAATGCGAACGCATTCACTTTCTGAAGATCTCCGCAATAAACCTTTAAACATGGTATTTTATCTGTTGAAGTAATTGCCATTGTGAGGTTATGTGCTATTGCTAATATGTATATTTTCctcattttgagatttttttcttCAGAGCGTTTGTTAAAAGGTCATTTTGGAGtcaaataaatttg
>TCONS_00007366
ttgtaactaattacacccaacactgcttATTGTCACCTCTCGCTTTAATTTTTACATCAAACAGTGCATAGACTCAAGGAGGACATCCGGCAGAATTAATCACAGCAATCAAGACACGACAACAAAAGCGTTTCTAACATCAGCACATTAATTTACCACTCACCTCCGGGGTGGACCATCATCTCCAGCAAACATGGCGAAAATGCTATCTGCCCAAGAGGCTGCCAAGATCTACCACACAAACTACGTGAGGAACGCGCGGGCCGTCGGCGTCCTGTGGACCATCTTCACCATCTGCTTCGCCATCATCGGTATGGTGGTCTTCATCCAGCCCTACTGGATCGGAGACAGCGTGGACACCCCCCAGTCTGGATACTTTGGCCTGTTCCACTACTGCATTGGGAATCCCATCACTGGAGAGCTGGTCTGTAAAGGCAGTGCTCTGGATTTCGGATCCATCCCTTCGGGCGCCTTCAAAACCGCCATGTTCTTCGTTGGCATCTCTTTGCTGCTGATCGTGGGCACCATTGTCTGCTTCAGTCTGTTCTTCTTCTGCAACTCGGGCAGTGTTTATAAGATCTGCGCGTGGATGCAGTTGGCAGCTGCGACGTGCATGGTCATCGGCTGTATGATCTATCCAGACGGCTGGGACTCAGAGGAGGTGAAGCGGATGTGTGGTCAGCGGACAGACAAATACACGCTGGGCAACTGTACGGTGCGCTGGGCTTACATCCTGGCCATCATCAGCATCATGGATTCCCTCACATTATCCTTCCTGGCCTTTGTGTTGGGCAACCGGCAGGACAAACTGCTGCCAGAGGACTTCCAGGAGGAGAAGAAAGGTATGAATACCCTGcggaaaaatccagcttaaaggctgggtggctggttttagctgattgaccaggctggttttagaggggtcacttccaggctggtttccagccatttccagcctggtcttagctggtcaggctgggagatgaccagctaaaaccagcgtgaccagcctagccaagctgggagtccagccaaaaccaactatatccag

Function

symbol description
lhfpl5a Acts upstream of or within detection of mechanical stimulus involved in sensory perception; inner ear receptor cell stereocilium organization; and protein localization to cilium. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in anterior macula; hair cell anterior macula; hair cell posterior macula; and posterior macula. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 67. Orthologous to human LHFPL5 (LHFPL tetraspan subfamily member 5).

GO:

id name namespace
GO:0050974 detection of mechanical stimulus involved in sensory perception biological_process
GO:0061512 protein localization to cilium biological_process
GO:0007605 sensory perception of sound biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110131-8 Acts upstream of or within detection of mechanical stimulus involved in sensory perception; inner ear receptor cell stereocilium organization; and protein localization to cilium. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in anterior macula; hair cell anterior macula; hair cell posterior macula; and posterior macula. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 67. Orthologous to human LHFPL5 (LHFPL tetraspan subfamily member 5).

Ensembl:

ensembl_id ENSDARG00000045023

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007365 False 1137 mRNA 0.49 4 2829812 2838699
TCONS_00007366 True 1051 mRNA 0.52 2 2832751 2837156

Neighbor

gene id symbol gene type direction distance location
XLOC_003835 NA coding downstream 69446 2756893 ~ 2760366 (-)
XLOC_003834 si:ch211-160o17.6 coding downstream 129415 2691243 ~ 2700397 (-)
XLOC_003833 si:ch211-160o17.2 coding downstream 197065 2616816 ~ 2632747 (-)
XLOC_003832 nab2 coding downstream 235767 2571486 ~ 2594045 (-)
XLOC_003831 cnpy2 coding downstream 280672 2540139 ~ 2549140 (-)
XLOC_003837 NA coding upstream 3399 2842098 ~ 2843883 (-)
XLOC_003838 NA coding upstream 137904 2976603 ~ 2982382 (-)
XLOC_003839 cdk2 coding upstream 462578 3301277 ~ 3308569 (-)
XLOC_003840 prph coding upstream 481899 3320598 ~ 3334250 (-)
XLOC_003841 tuba2 coding upstream 497825 3336524 ~ 3343463 (-)
XLOC_003938 BX324177.10 misc upstream 8500105 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 8528895 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 8531756 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 8542205 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 8545134 11383833 ~ 11384130 (-)
XLOC_003826 NA non-coding downstream 381298 2446641 ~ 2448514 (-)
XLOC_003825 NA non-coding downstream 513599 2315496 ~ 2316213 (-)
XLOC_003821 NA non-coding downstream 607372 2211065 ~ 2222440 (-)
XLOC_003817 NA non-coding downstream 909291 1915963 ~ 1920521 (-)
XLOC_003843 NA non-coding upstream 546405 3385104 ~ 3494964 (-)
XLOC_003853 CR450797.1 non-coding upstream 1115024 3953723 ~ 3953837 (-)
XLOC_003858 BX248331.2 non-coding upstream 1348323 4187022 ~ 4194697 (-)

Expression


Co-expression Network