XLOC_003829 (si:ch73-267c23.10)


Basic Information

Item Value
gene id XLOC_003829
gene name si:ch73-267c23.10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2471382 ~ 2478374 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007357
TGTCATTCCTGAACTCAAACACAGGCGCCTGTTTGGATCAGAACTGATTACCATATCAGTTACTGCCAGCATGATGTTTTtcagcattatttattaataatctgcCTTTATTACTTTAGATATCATTTTGATTAGACTCAAACTCGACTTTAACAGGAGTTTAGAGGCACCGCGGCTCTTGAAGACTGTTATTTTGTGGTTAACGGTAAATTATGTCTGCTGTGTTGAGGAGCCTGACTCGTTGGGTTTCCTGTCTCTGCAGCTGTGCATCATGTCTGACTTGCAGATGTTGTCCACACATCAGGAACTCTATTGTAACCCGAATCATGTACGCCTTCATCCTTCTGCTCGGCACAATCATCGCCTGTGTGATGCTGTCGCCTGGTGTTGAACAACAACTCAAAAGAATCCCTGGGTTTTGCACTGGAGGAGCTAGATCTGGTTATCCAGGAATTGAGGCCAATGTCCAGTGTGAGATGTTTGTTGGCTATAAGGCTGTGTATCGGGTCTGCTGTGGCATGAGTCTGTTTTTTCTCACCTTCTCCCTGTTCATGATCCGTGTGAAGAACAGCCGAGATCCCAGAGCTGCCGTCCACAATGGGTCAGTTCACTCAAATGTGGAGTACTTTATACTCGATTTACTTTATTCTAGAAAACTGCTTCTAGATCAGTAGTGGGGGGAgtacacaaataaattatttaagtcAAATCATTATTAGAACATTTGAATCAAGGAACTCTTATGTGGTGACTTGCACTATATTTCATCAGGTTCTGGTGTTTCAAGATTGCGGTCATGATTTCTGTCACTGCTGGTGCCTTTTATATTCCAGATGAGCCTTTTACCAGAAGTAAGTCTTCGACGTTTTCATTTCAGAATTGTAGATTTTATGGATGTAC

Function

symbol description
si:ch73-267c23.10 Predicted to act upstream of or within phosphatidylserine metabolic process and sphingolipid metabolic process. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human SERINC3 (serine incorporator 3).

GO:

id name namespace
GO:0006658 phosphatidylserine metabolic process biological_process
GO:0006665 sphingolipid metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-160114-59 Predicted to act upstream of or within phosphatidylserine metabolic process and sphingolipid metabolic process. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human SERINC3 (serine incorporator 3).

Ensembl:

ensembl_id ENSDARG00000111669

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007357 True 900 mRNA 0.42 3 2471382 2478374

Neighbor

gene id symbol gene type direction distance location
XLOC_003828 SERINC3 coding downstream 1853 2464543 ~ 2469529 (-)
XLOC_003827 slc2a10 coding downstream 14596 2448781 ~ 2456786 (-)
XLOC_003826 NA coding downstream 22868 2446641 ~ 2448514 (-)
XLOC_003825 NA coding downstream 155169 2315496 ~ 2316213 (-)
XLOC_003823 znf740a coding downstream 173550 2252983 ~ 2297832 (-)
XLOC_003830 dgkab coding upstream 1919 2480293 ~ 2504750 (-)
XLOC_003831 cnpy2 coding upstream 61765 2540139 ~ 2549140 (-)
XLOC_003832 nab2 coding upstream 93112 2571486 ~ 2594045 (-)
XLOC_003833 si:ch211-160o17.2 coding upstream 138442 2616816 ~ 2632747 (-)
XLOC_003834 si:ch211-160o17.6 coding upstream 212869 2691243 ~ 2700397 (-)
XLOC_003938 BX324177.10 misc upstream 8860430 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 8889220 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 8892081 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 8902530 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 8905459 11383833 ~ 11384130 (-)
XLOC_003821 NA non-coding downstream 248942 2211065 ~ 2222440 (-)
XLOC_003817 NA non-coding downstream 550861 1915963 ~ 1920521 (-)
XLOC_003816 NA non-coding downstream 555928 1911551 ~ 1915454 (-)
XLOC_003835 NA non-coding upstream 278519 2756893 ~ 2760366 (-)
XLOC_003837 NA non-coding upstream 363724 2842098 ~ 2843883 (-)
XLOC_003838 NA non-coding upstream 498229 2976603 ~ 2982382 (-)
XLOC_003843 NA non-coding upstream 906730 3385104 ~ 3494964 (-)
XLOC_003853 CR450797.1 non-coding upstream 1475349 3953723 ~ 3953837 (-)

Expression


Co-expression Network