XLOC_003827 (slc2a10)


Basic Information

Item Value
gene id XLOC_003827
gene name slc2a10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2448781 ~ 2456786 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007354
GCTTTTCTATTATAAACTCTGACTATGTTTTATCTTCAGCGATGTCCAGTTTGATATCGGGATGAAACATCTCTCCTGATGTGCTGAAATGTGAGTTAGCGGTTGAGCTACTTTTAGTTCTACCTCCGCCTTTCGTCTTTTGTTTTTATCCTCGCTCCTTAACAGGCTTGAGATAACTGTCCAGCTACAAATGGACTCTATAAACTCTACAAACAAGATCTCCAGGGTCAGCACTGGAGATGATGTTCGCCGACGAGGCAGACTTGTTTCGTATTTGATGAAGCAGCATCTTTAAATTCTCATCAAAATGGGTTGTTCTGTCCTGCTCCTGACCATCACTGTGTCCACTCTCGGTGGTCTGGTGTTCGGCTATGAGCTGGGAATTATATCCGGTGCTCTTCCACAGCTCCAAACTCACTTCTCTCTGGGCTGCGTCCAGCAGGAGGCCGTGGTCAGCGCTCTTCTGATCGGATCCCTCTTTGCGTCAATAATCGGCGGCTGGTTGATCGACCGCCATGGCAGAAGAACATCAATCTTACTCAGCAATCTCCTCATCCTGGCCGGCTCCGTTATTTTAACTACAGGCACATCCTTTTTCGCACTGGTCATCGGTCGGGCTGTTATTGGCTTCGCGATGACCGTTTCATCAATGAGCTGCTGTATCTTCGTCTCGGAGATGGTCACTCCTGAACGCAGAGGATTGATGGTGACTCTTTACGAAGTTGGGATCACGGTTGGCATCTTGATAGCTTACGCCGTCAACTATATCTTTAATAACGTGCCATTAACAGGCTGGAGGTACATGTTTGGATTTGCTATTATTCCATCACTCATCCAATTGGCATCCATTGTGCTTCTACCAAAGCAAGCTGAAGTCTTCGTAATACATGATGATGATAGTCGGCAAGCTGATAGATTAACAGAGGAAACGGAAACATCAAATCAGCATCAGCAAAGTGAGAAATATGGTGTTTCTGAcctttttaaaagcaaagataaCATGCGGAGGAGAACGGTGATTGGTGTTGGGTTGGTGCTGAGTCAGCAGTTCACAGGTCAACCAAATGTGCTCTTTTACGCCTCAACTATACTTTTCTCTGTCGGATTTCAAAGCAATGCTTCTGCAATCCTTGCGTCTGTGGGTTTCGGGATTGTTAAGGTCATCGCGACTCTACTAGCGATGTTGTGTTCAGATCGAGCCGGCCGGAGATCACTTCTGATTGGTGGATGCTCGATGTTGGCTGTAGGATTGATTCTCACTGGATTTCTATGCAGACAGTCAGTGATCGACACAACGAAACGATGCACTTCAGTAGGACCGCATTCAAATCTGACGTTATCTGCTGAACATGACGAAGGCGTGGGGTTCAGCTCTCAAACTCTTGATGTTCATGAACATTTACGGAGTTTTTCGCAGTCGGAGGACATTTATAAGTGGATTATTTTCACTTGTTTGATGGCGGTGGTGAGCGCTTTCTCTGTGAGCTTTGGACCAAtgACGTGGGTTGTGCTGAGTGAAATATTCCCGAAGGACATCCGAGGAAGAGCCTTTTCCTTCATCAACTGCTTCAATGTGGGCGCAAACCTCATAGTCAGCTTTTCTTTCCTGAGTATAATCGATGTCATTGGCCTGTCTGGAGTATTCTTGATGTATGGAGTTGTAGGAATAGCAGGCGTAGTGTTCATCTATCTTGTTCTACCAGAGACCAAAGGAAAATCTCTGCAGGATATCGACCGAGAGCTCTCTCAGACACGAATGATCCACAGACAGGAACTGTGCAGCATTTTCCAAAGACGGCGCTTTTCTCCAGGCTACCAGAGAGTTCAGCTGACGAGTACAGCAACCTGATGAAGTATGTTGACGGCATCATTCAGTTCATGATAATGGCTATTTGTGCTGTACCGTTTGATAAATATTTATGAAATCCATGTGCTTTTgccattataattttaaataaagtcatctCTACTCCTATTGT
>TCONS_00007355
TAGAGCTCATACTGTAGAGTTCACAGCTCCTGCCACGTCGCTGCTGCAGTTGCACTTCCTCAGATGAACAGGAGAAACTTCCAGCGAACTTTCCAACAACAAAAGACTGATGTAAACCCCGGATACAGAAGCTTTTCTATTATAAACTCTGACTATGTTTTATCTTCAGCGATGTCCAGTTTGATATCGGGATGAAACATCTCTCCTGATGTGCTGAAATGTGAGTTAGCGGTTGAGCTACTTTTAGTTCTACCTCCGCCTTTCGTCTTTTGTTTTTATCCTCGCTCCTTAACAGGCTTGAGATAACTGTCCAGCTACAAATGGACTCTATAAACTCTACAAACAAGATCTCCAGGGTCAGCACTGGAGGTAAAAACACATAAACACGAACTCGGGGATATTTTTAGCTAATGAGAAGCGCTTTCAAGAGCTCCTCATCTGATTGAATCACAGTCGTCATGGCGACAGCCCGACACTGATTACAGACCAGACTGAGCTTCAGTTCGGTTTCATTCACTCTCTGTGTGTTTGTTATGATAATAATAGATGATGTTCGCCGACGAGGCAGACTTGTTTCGTATTTGATGAAGCAGCATCTTTAAATTCTCATCAAAATGGGTTGTTCTGTCCTGCTCCTGACCATCACTGTGTCCACTCTCGGTGGTCTGGTGTTCGGCTATGAGCTGGGAATTATATCCGGTGCTCTTCCACAGCTCCAAACTCACTTCTCTCTGGGCTGCGTCCAGCAGGAGGCCGTGGTCAGCGCTCTTCTGATCGGATCCCTCTTTGCGTCAATAATCGGCGGCTGGTTGATCGACCGCCATGGCAGAAGAACATCAATCTTACTCAGCAATCTCCTCATCCTGGCCGGCTCCGTTATTTTAACTACAGGCACATCCTTTTTCGCACTGGTCATCGGTCGGGCTGTTATTGGCTTCGCGATGACCGTTTCATCAATGAGCTGCTGTATCTTCGTCTCGGAGATGGTCACTCCTGAACGCAGAGGATTGATGGTGACTCTTTACGAAGTTGGGATCACGGTTGGCATCTTGATAGCTTACGCCGTCAACTATATCTTTAATAACGTGCCATTAACAGGCTGGAGGTACATGTTTGGATTTGCTATTATTCCATCACTCATCCAATTGGCATCCATTGTGCTTCTACCAAAGCAAGCTGAAGTCTTCGTAATACATGATGATGATAGTCGGCAAGCTGATAGATTAACAGAGGAAACGGAAACATCAAATCAGCATCAGCAAAGTGAGAAATATGGTGTTTCTGAcctttttaaaagcaaagataaCATGCGGAGGAGAACGGTGATTGGTGTTGGGTTGGTGCTGAGTCAGCAGTTCACAGGTCAACCAAATGTGCTCTTTTACGCCTCAACTATACTTTTCTCTGTCGGATTTCAAAGCAATGCTTCTGCAATCCTTGCGTCTGTGGGTTTCGGGATTGTTAAGGTCATCGCGACTCTACTAGCGATGTTGTGTTCAGATCGAGCCGGCCGGAGATCACTTCTGATTGGTGGATGCTCGATGTTGGCTGTAGGATTGATTCTCACTGGATTTCTATGCAGACAGTCAGTGATCGACACAACGAAACGATGCACTTCAGTAGGACCGCATTCAAATCTGACGTTATCTGCTGAACATGACGAAGGCGTGGGGTTCAGCTCTCAAACTCTTGATGTTCATGAACATTTACGGAGTTTTTCGCAGTCGGAGGACATTTATAAGTGGATTATTTTCACTTGTTTGATGGCGGTGGTGAGCGCTTTCTCTGTGAGCTTTGGACCAAtgACGTGGGTTGTGCTGAGTGAAATATTCCCGAAGGACATCCGAGGAAGAGCCTTTTCCTTCATCAACTGCTTCAATGTGGGCGCAAACCTCATAGTCAGCTTTTCTTTCCTGAGTATAATCGATGTCATTGGCCTGTCTGGAGTATTCTTGATGTATGGAGTTGTAGGAATAGCAGGCGTAGTGTTCATCTATCTTGTTCTACCAGAGACCAAAGGAAAATCTCTGCAGGATATCGACCGAGAGCTCTCTCAGACACGAATGATCCACAGACAGGAACTGTGCAGCATTTTCCAAAGACGGCGCTTTTCTCCAGGCTACCAGAGAGTTCAGCTGACGAGTACAGCAACCTGATGAAGTATGTTGACGGCATCATTCAGTTCATGATAATGGCTATTTGTGCTGTACCGTTTGATAAATATTTATGAAATCCATGTGCTTTTgccattataattttaaataaagtcatctCTACTCCTATTGT

Function

symbol description
slc2a10 Predicted to enable transmembrane transporter activity. Acts upstream of or within circulatory system development and notochord development. Predicted to be located in endomembrane system; membrane; and perinuclear region of cytoplasm. Predicted to be integral component of membrane. Is expressed in several structures, including fin; hatching gland; nervous system; pectoral fin bud; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in arterial tortuosity syndrome. Orthologous to human SLC2A10 (solute carrier family 2 member 10).

GO:

id name namespace
GO:0072359 circulatory system development biological_process
GO:0055085 transmembrane transport biological_process
GO:0008643 carbohydrate transport biological_process
GO:0030903 notochord development biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-080204-6 Predicted to enable transmembrane transporter activity. Acts upstream of or within circulatory system development and notochord development. Predicted to be located in endomembrane system; membrane; and perinuclear region of cytoplasm. Predicted to be integral component of membrane. Is expressed in several structures, including fin; hatching gland; nervous system; pectoral fin bud; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in arterial tortuosity syndrome. Orthologous to human SLC2A10 (solute carrier family 2 member 10).

Ensembl:

ensembl_id ENSDARG00000090820

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007354 False 1979 mRNA 0.45 6 2448781 2456656
TCONS_00007355 True 2286 mRNA 0.45 5 2448781 2456786

Neighbor

gene id symbol gene type direction distance location
XLOC_003826 NA coding downstream 267 2446641 ~ 2448514 (-)
XLOC_003825 NA coding downstream 132568 2315496 ~ 2316213 (-)
XLOC_003823 znf740a coding downstream 150949 2252983 ~ 2297832 (-)
XLOC_003824 znf740a coding downstream 171700 2276354 ~ 2277081 (-)
XLOC_003822 hnrnpa1a coding downstream 198014 2240075 ~ 2250767 (-)
XLOC_003828 SERINC3 coding upstream 7757 2464543 ~ 2469529 (-)
XLOC_003829 si:ch73-267c23.10 coding upstream 14596 2471382 ~ 2478374 (-)
XLOC_003830 dgkab coding upstream 23507 2480293 ~ 2504750 (-)
XLOC_003831 cnpy2 coding upstream 83353 2540139 ~ 2549140 (-)
XLOC_003832 nab2 coding upstream 114700 2571486 ~ 2594045 (-)
XLOC_003938 BX324177.10 misc upstream 8882018 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 8910808 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 8913669 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 8924118 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 8927047 11383833 ~ 11384130 (-)
XLOC_003821 NA non-coding downstream 226341 2211065 ~ 2222440 (-)
XLOC_003817 NA non-coding downstream 528260 1915963 ~ 1920521 (-)
XLOC_003816 NA non-coding downstream 533327 1911551 ~ 1915454 (-)
XLOC_003835 NA non-coding upstream 300107 2756893 ~ 2760366 (-)
XLOC_003837 NA non-coding upstream 385312 2842098 ~ 2843883 (-)
XLOC_003838 NA non-coding upstream 519817 2976603 ~ 2982382 (-)
XLOC_003843 NA non-coding upstream 928318 3385104 ~ 3494964 (-)
XLOC_003853 CR450797.1 non-coding upstream 1496937 3953723 ~ 3953837 (-)

Expression


Co-expression Network