RNA id: TCONS_00007355


Basic Information

Item Value
RNA id TCONS_00007355
length 2286
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_003827
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2448781 ~ 2456786 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGAGCTCATACTGTAGAGTTCACAGCTCCTGCCACGTCGCTGCTGCAGTTGCACTTCCTCAGATGAACAGGAGAAACTTCCAGCGAACTTTCCAACAACAAAAGACTGATGTAAACCCCGGATACAGAAGCTTTTCTATTATAAACTCTGACTATGTTTTATCTTCAGCGATGTCCAGTTTGATATCGGGATGAAACATCTCTCCTGATGTGCTGAAATGTGAGTTAGCGGTTGAGCTACTTTTAGTTCTACCTCCGCCTTTCGTCTTTTGTTTTTATCCTCGCTCCTTAACAGGCTTGAGATAACTGTCCAGCTACAAATGGACTCTATAAACTCTACAAACAAGATCTCCAGGGTCAGCACTGGAGGTAAAAACACATAAACACGAACTCGGGGATATTTTTAGCTAATGAGAAGCGCTTTCAAGAGCTCCTCATCTGATTGAATCACAGTCGTCATGGCGACAGCCCGACACTGATTACAGACCAGACTGAGCTTCAGTTCGGTTTCATTCACTCTCTGTGTGTTTGTTATGATAATAATAGATGATGTTCGCCGACGAGGCAGACTTGTTTCGTATTTGATGAAGCAGCATCTTTAAATTCTCATCAAAATGGGTTGTTCTGTCCTGCTCCTGACCATCACTGTGTCCACTCTCGGTGGTCTGGTGTTCGGCTATGAGCTGGGAATTATATCCGGTGCTCTTCCACAGCTCCAAACTCACTTCTCTCTGGGCTGCGTCCAGCAGGAGGCCGTGGTCAGCGCTCTTCTGATCGGATCCCTCTTTGCGTCAATAATCGGCGGCTGGTTGATCGACCGCCATGGCAGAAGAACATCAATCTTACTCAGCAATCTCCTCATCCTGGCCGGCTCCGTTATTTTAACTACAGGCACATCCTTTTTCGCACTGGTCATCGGTCGGGCTGTTATTGGCTTCGCGATGACCGTTTCATCAATGAGCTGCTGTATCTTCGTCTCGGAGATGGTCACTCCTGAACGCAGAGGATTGATGGTGACTCTTTACGAAGTTGGGATCACGGTTGGCATCTTGATAGCTTACGCCGTCAACTATATCTTTAATAACGTGCCATTAACAGGCTGGAGGTACATGTTTGGATTTGCTATTATTCCATCACTCATCCAATTGGCATCCATTGTGCTTCTACCAAAGCAAGCTGAAGTCTTCGTAATACATGATGATGATAGTCGGCAAGCTGATAGATTAACAGAGGAAACGGAAACATCAAATCAGCATCAGCAAAGTGAGAAATATGGTGTTTCTGAcctttttaaaagcaaagataaCATGCGGAGGAGAACGGTGATTGGTGTTGGGTTGGTGCTGAGTCAGCAGTTCACAGGTCAACCAAATGTGCTCTTTTACGCCTCAACTATACTTTTCTCTGTCGGATTTCAAAGCAATGCTTCTGCAATCCTTGCGTCTGTGGGTTTCGGGATTGTTAAGGTCATCGCGACTCTACTAGCGATGTTGTGTTCAGATCGAGCCGGCCGGAGATCACTTCTGATTGGTGGATGCTCGATGTTGGCTGTAGGATTGATTCTCACTGGATTTCTATGCAGACAGTCAGTGATCGACACAACGAAACGATGCACTTCAGTAGGACCGCATTCAAATCTGACGTTATCTGCTGAACATGACGAAGGCGTGGGGTTCAGCTCTCAAACTCTTGATGTTCATGAACATTTACGGAGTTTTTCGCAGTCGGAGGACATTTATAAGTGGATTATTTTCACTTGTTTGATGGCGGTGGTGAGCGCTTTCTCTGTGAGCTTTGGACCAAtgACGTGGGTTGTGCTGAGTGAAATATTCCCGAAGGACATCCGAGGAAGAGCCTTTTCCTTCATCAACTGCTTCAATGTGGGCGCAAACCTCATAGTCAGCTTTTCTTTCCTGAGTATAATCGATGTCATTGGCCTGTCTGGAGTATTCTTGATGTATGGAGTTGTAGGAATAGCAGGCGTAGTGTTCATCTATCTTGTTCTACCAGAGACCAAAGGAAAATCTCTGCAGGATATCGACCGAGAGCTCTCTCAGACACGAATGATCCACAGACAGGAACTGTGCAGCATTTTCCAAAGACGGCGCTTTTCTCCAGGCTACCAGAGAGTTCAGCTGACGAGTACAGCAACCTGATGAAGTATGTTGACGGCATCATTCAGTTCATGATAATGGCTATTTGTGCTGTACCGTTTGATAAATATTTATGAAATCCATGTGCTTTTgccattataattttaaataaagtcatctCTACTCCTATTGT

Function

GO:

id name namespace
GO:0072359 circulatory system development biological_process
GO:0055085 transmembrane transport biological_process
GO:0008643 carbohydrate transport biological_process
GO:0030903 notochord development biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-080204-6 Predicted to enable transmembrane transporter activity. Acts upstream of or within circulatory system development and notochord development. Predicted to be located in endomembrane system; membrane; and perinuclear region of cytoplasm. Predicted to be integral component of membrane. Is expressed in several structures, including fin; hatching gland; nervous system; pectoral fin bud; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in arterial tortuosity syndrome. Orthologous to human SLC2A10 (solute carrier family 2 member 10).

Ensembl:

ensembl_id ENSDART00000167938

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008442 lncRNA downstream 267 2446641 ~ 2448514 (-) True XLOC_003826
TCONS_00008735 lncRNA downstream 132568 2315496 ~ 2316213 (-) True XLOC_003825
TCONS_00008441 lncRNA downstream 228518 2211065 ~ 2220263 (-) False XLOC_003821
TCONS_00008734 lncRNA downstream 528260 1915963 ~ 1920521 (-) True XLOC_003817
TCONS_00008733 lncRNA downstream 534051 1913767 ~ 1914730 (-) True XLOC_003816
TCONS_00007363 lncRNA upstream 168246 2625032 ~ 2628137 (-) True XLOC_003833
TCONS_00008736 lncRNA upstream 300107 2756893 ~ 2760366 (-) True XLOC_003835
TCONS_00008443 lncRNA upstream 385312 2842098 ~ 2843883 (-) True XLOC_003837
TCONS_00008737 lncRNA upstream 519817 2976603 ~ 2982381 (-) False XLOC_003838
TCONS_00008738 lncRNA upstream 519817 2976603 ~ 2982382 (-) True XLOC_003838
TCONS_00007351 mRNA downstream 150949 2252983 ~ 2297832 (-) False XLOC_003823
TCONS_00007353 mRNA downstream 171700 2276354 ~ 2277081 (-) True XLOC_003824
TCONS_00007352 mRNA downstream 178712 2263461 ~ 2270069 (-) True XLOC_003823
TCONS_00007350 mRNA downstream 198014 2240075 ~ 2250767 (-) True XLOC_003822
TCONS_00007348 mRNA downstream 226341 2217413 ~ 2222440 (-) False XLOC_003821
TCONS_00007356 mRNA upstream 7757 2464543 ~ 2469529 (-) True XLOC_003828
TCONS_00007357 mRNA upstream 14596 2471382 ~ 2478374 (-) True XLOC_003829
TCONS_00007358 mRNA upstream 23507 2480293 ~ 2504750 (-) True XLOC_003830
TCONS_00007360 mRNA upstream 83353 2540139 ~ 2549140 (-) False XLOC_003831
TCONS_00007359 mRNA upstream 83353 2540139 ~ 2549140 (-) True XLOC_003831
TCONS_00007330 other downstream 1360266 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 1469033 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 1988851 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 2097080 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 1496937 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 3615174 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 3740490 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 4323922 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 4487514 6944300 ~ 6948018 (-) False XLOC_003898

Expression Profile

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