RNA id: TCONS_00008733


Basic Information

Item Value
RNA id TCONS_00008733
length 964
lncRNA type antisense_over
GC content 0.29
exon number 1
gene id XLOC_003816
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 1911551 ~ 1915454 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atttattaatgttaaaaaataagcATTAGTTAAAAACAGTTTTAGTCAATAAACTAGAATATTCCTCAATAAGTGGCATAATTCATGTGGATATCACCTTCACTTTAGCTCAAACTGCCTTTATTACCATGTAATAATGACTTTTAGCCTTAATTATTAGCTTGTTGTAATCAATAAACTTGAATATTCCCCAATAAGTGCCATATTTAATGTGGATATCACTTTCATTTTAGAATAGGGGTCAAATTGACTTTATTAACACAGTATTAATGACCTTTATGCCTAAATTATTAGCTTGTTTTAGTCAATAAACTTGAATATTCCTCAATAAGTGTCATAATTATTGTAGATATCATTTTCACTTTAGAATAGGGGGGCAAATTTCCTTCATTAGCACTGTATTAATGACCTTTCAGCCCTAATTATTACCTTGTTTTATTCAATAAACTAGAATATCCCTCAATAAGTGCCATAATTAATGTGGATATCACTTTCACTTTACAATAGGGGGTCAAATTTCCTTCATTAGCACTGTAATAATGACCTTTTAGGCTTAATTATTAGCTGGTTTTAGTTAATAAACTAGAATATTCCCCAATAAGTGCCATAATTAATATGGATATCACTTTCAGTTTAGAATAGAAGGTCAAATTGTTTTTATTAGCACTGTATTAATGACCTTTAAGGCGTAATTATTAGGTTTTCTTAATCAATAAACTTGAATATTCCACAATAAGTGCCAAAACTAATGTGGATATCACTTTGAGTTTACAATAGTGTCCTTCATTAGCACAGTATTTATGACGTTTTAGCCTTAATTATTAGCTTGCTTTATTTAATAAACGTGATTATGCCTCAATAAGTGCCATAATTAATGTTGATTTTACTTTCACTTCAGTATAGAGAGTCAAATTTCCTTCATTAGCACTGTATTTATGACCTTTATAAATGTGGATATAACTTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008731 lncRNA downstream 45842 1854431 ~ 1867925 (-) True XLOC_003815
TCONS_00008730 lncRNA downstream 308480 1603728 ~ 1605287 (-) True XLOC_003814
TCONS_00007340 lncRNA downstream 477895 1423111 ~ 1435872 (-) True XLOC_003812
TCONS_00007336 lncRNA downstream 513133 1396300 ~ 1400634 (-) False XLOC_003810
TCONS_00008440 lncRNA downstream 825138 1069407 ~ 1088629 (-) True XLOC_003806
TCONS_00008734 lncRNA upstream 1233 1915963 ~ 1920521 (-) True XLOC_003817
TCONS_00008441 lncRNA upstream 296335 2211065 ~ 2220263 (-) False XLOC_003821
TCONS_00008735 lncRNA upstream 400766 2315496 ~ 2316213 (-) True XLOC_003825
TCONS_00008442 lncRNA upstream 531911 2446641 ~ 2448514 (-) True XLOC_003826
TCONS_00007363 lncRNA upstream 710302 2625032 ~ 2628137 (-) True XLOC_003833
TCONS_00007341 mRNA downstream 363058 1547226 ~ 1550709 (-) True XLOC_003813
TCONS_00007339 mRNA downstream 403994 1422737 ~ 1509773 (-) False XLOC_003812
TCONS_00007338 mRNA downstream 504531 1403741 ~ 1409236 (-) True XLOC_003811
TCONS_00007335 mRNA downstream 513137 1396300 ~ 1400630 (-) False XLOC_003810
TCONS_00007342 mRNA upstream 11074 1925804 ~ 1935883 (-) False XLOC_003818
TCONS_00007343 mRNA upstream 11974 1926704 ~ 1933793 (-) True XLOC_003818
TCONS_00007344 mRNA upstream 29999 1944729 ~ 1967438 (-) False XLOC_003819
TCONS_00007345 mRNA upstream 30325 1945055 ~ 1956204 (-) False XLOC_003819
TCONS_00007346 mRNA upstream 30328 1945058 ~ 1948784 (-) True XLOC_003819
TCONS_00007330 other downstream 825252 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 934019 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 1453837 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 1562066 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 2038993 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 4157230 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 4282546 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 4865978 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 5029570 6944300 ~ 6948018 (-) False XLOC_003898

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU280532 True 257 lncRNA 0.28 1 CI01000058 61870 ~ 62126 (+)
eurasian perch (Perca fluviatilis) TU280532 True 463 lncRNA 0.42 2 NC_053131.1 31034796 ~ 31035354 (-)