RNA id: TCONS_00007340


Basic Information

Item Value
RNA id TCONS_00007340
length 901
lncRNA type retained_intron
GC content 0.50
exon number 5
gene id XLOC_003812
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 1422737 ~ 1509773 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGATCTCCAGAATCACACCACACTCCCTCTCTGCGCGTCAGGGAGCTCAGGGCGCCTTTTTCACGCTTTTATACGACTTTTTTCGTATTTAACCTTTTATTCGCTTCTTGTTTCCGTCGATGAGGCGTTCATACAGTCTTAGTCTCGCACACAAGTGCATTTATTCTCTGAAATCAGCGAGTCTGGAGCTCAGATAGTAAAATACAGCTCGATGTGGACGCGCTTCAGGGATGCTCGGTGGAGTTTAGACGCGCGACGGGACGCGATGTTTGCCTCTAAAAGAGCGACTTCTTCTCGGCACTGACTGTCACACACAACGGAGAGAGATTAAACATGGTCCAGAACGTGATTTTGGTGTTTTTCCGCAGGAGATTGAGCCAGAGACCGGCGGTGGAGGAGCTGGAGAGCAGAAACATCCTCAAACAGAGGAATGACCAGACAGAACAAGAGGAGAGACGGGAAATCAAGCAAAGGCTAAACAGAAAGCTCAACCAGCGGCCGACTGTTGACGAGCTGCGGGACAGAAAGATTCTGATCCGCTTCAGTGACTATGTGGAAGTGGCCAAAGCTCAGGATTATGACAGGAGAGCAGACAAACCCTGGACCAGACTCTCAGCTTCTGATAAGGCGGCGATACGCAAAGAGCTGAACGAGTTCAAGAGCAACGAGATGGAGGTTCATGCATCAAGCAAACACCTCACAAGGTTCCACCGACCATAGCAAGGTTTCTTCCGTGAAGAAGATGCTAACGGTATCTCTGTGAAGTCTGAGACCTCAGGAGGCTCTCCATGGAGGGCCTGATATTTGGGCGCTAGTGAACCTTGGAGACCGTGTCTCTGGAGCTTCAGCCTGAAGAAGCCAAAACCCTCCAATCGCCACTCAGTAGATCATTCATGGTTTT

Function

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0005575 cellular_component cellular_component
GO:0008157 protein phosphatase 1 binding molecular_function
GO:0004864 protein phosphatase inhibitor activity molecular_function
GO:0019888 protein phosphatase regulator activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-156 Predicted to enable actin binding activity. Predicted to be involved in actin cytoskeleton organization. Is expressed in adaxial cell; myotome; nervous system; and somite. Orthologous to human PHACTR3 (phosphatase and actin regulator 3).

Ensembl:

ensembl_id ENSDART00000155269

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007336 lncRNA downstream 22477 1396300 ~ 1400634 (-) False XLOC_003810
TCONS_00008440 lncRNA downstream 334482 1069407 ~ 1088629 (-) True XLOC_003806
TCONS_00008729 lncRNA downstream 334484 1065161 ~ 1088627 (-) False XLOC_003806
TCONS_00007329 lncRNA downstream 334484 1065161 ~ 1088627 (-) False XLOC_003806
TCONS_00007328 lncRNA downstream 404566 1014962 ~ 1018545 (-) True XLOC_003805
TCONS_00008730 lncRNA upstream 167856 1603728 ~ 1605287 (-) True XLOC_003814
TCONS_00008731 lncRNA upstream 418559 1854431 ~ 1867925 (-) True XLOC_003815
TCONS_00008732 lncRNA upstream 475679 1911551 ~ 1915454 (-) False XLOC_003816
TCONS_00008733 lncRNA upstream 477895 1913767 ~ 1914730 (-) True XLOC_003816
TCONS_00008734 lncRNA upstream 480091 1915963 ~ 1920521 (-) True XLOC_003817
TCONS_00007338 mRNA downstream 13875 1403741 ~ 1409236 (-) True XLOC_003811
TCONS_00007335 mRNA downstream 22481 1396300 ~ 1400630 (-) False XLOC_003810
TCONS_00007334 mRNA downstream 22501 1396170 ~ 1400610 (-) False XLOC_003810
TCONS_00007337 mRNA downstream 22604 1396301 ~ 1400507 (-) True XLOC_003810
TCONS_00007333 mRNA downstream 30643 1337620 ~ 1392468 (-) True XLOC_003809
TCONS_00007341 mRNA upstream 111354 1547226 ~ 1550709 (-) True XLOC_003813
TCONS_00007342 mRNA upstream 489932 1925804 ~ 1935883 (-) False XLOC_003818
TCONS_00007343 mRNA upstream 490832 1926704 ~ 1933793 (-) True XLOC_003818
TCONS_00007344 mRNA upstream 508857 1944729 ~ 1967438 (-) False XLOC_003819
TCONS_00007345 mRNA upstream 509183 1945055 ~ 1956204 (-) False XLOC_003819
TCONS_00007330 other downstream 334596 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 443363 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 963181 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 1071410 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 2517851 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 4636088 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 4761404 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 5344836 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 5508428 6944300 ~ 6948018 (-) False XLOC_003898

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU752038 True 3595 TUCP 0.46 4 NC_048571.1 88253063 ~ 88259405 (-)
eurasian perch (Perca fluviatilis) TU70611 False 1301 TUCP 0.48 5 NC_053116.1 24750440 ~ 24753087 (-)
tiger barb (Puntius tetrazona) TU116011 False 1886 TUCP 0.49 5 NC_056709.1 1217451 ~ 1222466 (-)