RNA id: TCONS_00007338


Basic Information

Item Value
RNA id TCONS_00007338
length 1801
RNA type mRNA
GC content 0.51
exon number 5
gene id XLOC_003811
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 1403741 ~ 1409236 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTACAGTATCTCTGAGGCTGCCGACTACTACATTTCCCATATAACAATGCGCCCACAGCTGGAATGCACGCCCACGTAAATATCCTCATTTAAATAACAGGTATCAGACAATTAAGCCTAAATAAAGCCCATCGATCTGCACCTGAACGCCTGCTTTGAGCGATGCGTCTGATTACAGACAGACTGATCCGGTTGCTGAATTATTTACGGTAGATCGGTACTGATGCTCGGTGGATTATTACAGGGATCAgcgacagacagagagagagacgatTAATCGAGGGAGAAACCATCAAATGAGCAGGAAGGATGGATAAACGCTCAGCTGGAAAGAGAAAACATCAGTTGTAGGAGATCCAGGCTGATTTGGGGAATATGGGAACAGTCCTGCAGGAGAGCACTGTATACAACAGTCTGAATCTCAACCACAGCCAATATAAAGCCGCGAGACATGCAGCAGCAAGCAAGAAAACCTCAAAGGCACCTTTGCTTCCAACACCGAACACCAGCCCTTCATCTGAACCTGTCTGCCAGCAGAGGTTAAGACGAATAAGACCAGACACAATGCTGATTATGGCCAATCCCACACACAGGCAACAAAGCTCAGTGAAGCTCAGATCTCATGCAGCTTCCAAAAATGGACATAAAGACAATAGGAAAAACCCCGGTGCTGTGAAAGAGAGCGAAGGCAAGGCTAATAGTGTGAAGTCTGACACTGTAAATGCTGAGAGAGAAGAGCCGTCCGACTGCAGAACCGAGGAGGAGAGTTGTTCATCTCGGAGTAAAGCTGGAGGAGACGACAGCGCCAGCGACATCTCCGACTCTGAGCGATACTCTGTGCTGCCTGCTAAGATTTCTCCTCCTGACCTCGACCTGCGTGCAGAAGTCATAGACGGCTCAGACCCCCTTCACTCCTTCAAACCCACAAACCGAGTTCAGAGAAGCAGCTTTCCAGATTTCCTCCCGCCTCCGTTTAACTCCTGGAGCCTCACGCAGCTGGCGGTGTATCTGAACACCGACGGCAAGACCATTCCTCGACCCAAACCCGTCGGCCAGCTGGAGAGATACCTAGACCGGCTTTTGCAGATGGAGTGGCACCAGATCCAAACCCTCCAAGAAGACTCCAGCAAATCTGCACCGAAACATCGCCACCCGACGCCTCACTCCAGTCTCAGCGCTCCTAAATGCATCCTCCAATGCCAGCGTGCGTTTCCACTGGGTTTGCTGTCATCTATGACTTCACTACATCTCTCCTGCACACACTGCCACAACCACTACTCTACTGGATCATACCGTCAGCACACTCGCTTGCATACGGAGAAGAGATCTTCAGGCGTTCCTCAGAGGAGCAGCAGCGAGAGCAGGACTCGATCTGAGCCTCGACACCGCGAACACAGACTCAGCGATCCTCTAAGCGAGAGCAGACATCTGAGACGCATGCAGGCGGCGGGAAACATCCGCAATCCCGTCTCCACATGCAGTCCTGAGCCGCTTTCTGATGCTGGGGATGTGAAGAAGCGGAGGCCAGGGCGGAGGAGTCAGTCCTCTGTGGGTGCTAGAGAGTTTGGGTCTAGAGTTCGAGGACGCAGTGAACAGAGGAAAACACAAGAGGACTGTGTGTTATCCAGTGCTGGAGCTTCAGATGCTCTACGGGGCTCAAAAGAGTCTAGTCGACTCAACAGGAAGCAGAAGCGTGTTGAATTCCTCACACAATGACTTCAGTAGTATGGTGcattagattcattcattcattttccatcgcaTTAGTGGCTTATTTAtcaaaggtcaccacagtggaa

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-120215-250 Orthologous to human FAM217B (family with sequence similarity 217 member B).

Ensembl:

ensembl_id ENSDART00000121537

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007336 lncRNA downstream 3107 1396300 ~ 1400634 (-) False XLOC_003810
TCONS_00008440 lncRNA downstream 315112 1069407 ~ 1088629 (-) True XLOC_003806
TCONS_00008729 lncRNA downstream 315114 1065161 ~ 1088627 (-) False XLOC_003806
TCONS_00007329 lncRNA downstream 315114 1065161 ~ 1088627 (-) False XLOC_003806
TCONS_00007328 lncRNA downstream 385196 1014962 ~ 1018545 (-) True XLOC_003805
TCONS_00007340 lncRNA upstream 13875 1423111 ~ 1435872 (-) True XLOC_003812
TCONS_00008730 lncRNA upstream 194492 1603728 ~ 1605287 (-) True XLOC_003814
TCONS_00008731 lncRNA upstream 445195 1854431 ~ 1867925 (-) True XLOC_003815
TCONS_00008732 lncRNA upstream 502315 1911551 ~ 1915454 (-) False XLOC_003816
TCONS_00008733 lncRNA upstream 504531 1913767 ~ 1914730 (-) True XLOC_003816
TCONS_00007335 mRNA downstream 3111 1396300 ~ 1400630 (-) False XLOC_003810
TCONS_00007334 mRNA downstream 3131 1396170 ~ 1400610 (-) False XLOC_003810
TCONS_00007337 mRNA downstream 3234 1396301 ~ 1400507 (-) True XLOC_003810
TCONS_00007333 mRNA downstream 11273 1337620 ~ 1392468 (-) True XLOC_003809
TCONS_00007332 mRNA downstream 112729 1148701 ~ 1291012 (-) True XLOC_003808
TCONS_00007339 mRNA upstream 13501 1422737 ~ 1509773 (-) False XLOC_003812
TCONS_00007341 mRNA upstream 137990 1547226 ~ 1550709 (-) True XLOC_003813
TCONS_00007342 mRNA upstream 516568 1925804 ~ 1935883 (-) False XLOC_003818
TCONS_00007343 mRNA upstream 517468 1926704 ~ 1933793 (-) True XLOC_003818
TCONS_00007344 mRNA upstream 535493 1944729 ~ 1967438 (-) False XLOC_003819
TCONS_00007330 other downstream 315226 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 423993 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 943811 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 1052040 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 2544487 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 4662724 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 4788040 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 5371472 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 5535064 6944300 ~ 6948018 (-) False XLOC_003898

Expression Profile

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