RNA id: TCONS_00007339


Basic Information

Item Value
RNA id TCONS_00007339
length 2238
RNA type mRNA
GC content 0.55
exon number 13
gene id XLOC_003812
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 1422737 ~ 1509773 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGCTCTCCTCCTCAGCGCTGCTGTTTCTGTCAAACTGAATCTGCTCTCAGTCATTGACGCGCGCAGCTCGGCATTTCTCTCCATCACCGCGGGTTTCCTCCTCCATGGCCGCATCAGATGGACCAGAGGACTGCGTCGTGCAGAGAGGAAGATCTCAGAGCGACCCGAGCATCCTCACCGAGACTCGTGTCGTGCCAGATGTGATGGATCAGCACAGAGCGCTTCATTCTGGATGTCTGGTGTCCGGGGTCCGAACGCCGCCCATCCGCCGCAACAGTAAGCTGGCCAGCCTGGGGCGCATCTTCAAACCCTGGAAGTGGAGGAAAAAGAAAAACGAGAAGCTCAGGCAGGGCTCTACGGCGCTGGAGAGGAAAGTGTCCAGCAGGCAGAATCACGAGGATCCTGTTAGGAAAGGCCTGGCGGAGGCTGGCATGGACTCTGCGGTGGCCTGCGGAGGGAGCGCAGATGAGCCGGGAAACCCAGTAATGGAGGACTCAGATGGGGACGAGCCGGAGGATGAGCCCATGGCACCGCTGGCCTCCACCACAGAGGATCTGGGATCTGATGAGGACAATCTGTCTACAGTACGAGATGCAGCGGAGATGACGGAAACAGAGGCAGACCTCGGGCACAGCGAGGATGAAGACGGCTCCGCTGCGGATGCTGTCGGGCCCTTGGAGGCACCTGAGAGCCCTGAGGAGAAACACGAGGAGCCGGCGCCCAGAGAAACGCACACTCCTCCAGCCAAACTCCCTGTGAAGCTGCTCACACGCCTGGGCAGTCTGGACGGAACTCACTCTCATCAGAGCCGTCCCGCTCCAGCCACCCTGCCCAGGAACTTCACCCTCCCTAAAGACGCCCTGCGGGGCCGGATCTCCACCCCGACTGGCTCTCCTCATCTGGGGCTCCTGCACCCTCAGCTGCCCCCTAGCTGCATCATAGAGGAGCTGCACCGCGCGCTGGCCACCAAACACCGGCAGGACAGTTTTCACAGTAAGGAGATCCGCAGTTCCCCGAAGCGGCGCTCGGACAGTCGTCTGCCCCGCGTGGCCAGCACTGAGAATGAGCAGAGCGGAGAAGCGGAAAACAAGAAAGAGGCTGAAGAAAACAAGGAGAACATGCGTCTGGATGAGATCTACAGCGACCAGGACAGCTGGAACGAGTCCGTCATCTCTGGAACTCTTCCACGGCGGATAAGAAAAGAGCTTCTGGCGGTAAAGCTGCGTAACCGGCCCAGTAAACAGGAGCTGGAGGACAGAAACATCTTCCCTGTGCGCAGCGATCAGGAGCGGCAGGAGATCCGCCAGCAGATCGAGATGAAGCTCGCCAAGAGATTGAGCCAGAGACCGGCGGTGGAGGAGCTGGAGAGCAGAAACATCCTCAAACAGAGGAATGACCAGACAGAACAAGAGGAGAGACGGGAAATCAAGCAAAGGCTAAACAGAAAGCTCAACCAGCGGCCGACTGTTGACGAGCTGCGGGACAGAAAGATTCTGATCCGCTTCAGTGACTATGTGGAAGTGGCCAAAGCTCAGGATTATGACAGGAGAGCAGACAAACCCTGGACCAGACTCTCAGCTTCTGATAAGGCGGCGATACGCAAAGAGCTGAACGAGTTCAAGAGCAACGAGATGGAGGTTCATGCATCAAGCAAACACCTCACAAGGTTCCACCGACCATAGCAAGGTTTCTTCCGTGAAGAAGATGCTAACGGTATCTCTGTGAAGTCTGAGACCTCAGGAGGCTCTCCATGGAGGGCCTGATATTTGGGCGCTAGTGAACCTTGGAGACCGTGTCTCTGGAGCTTCAGCCTGAAGAAGCCAAAACCCTCCAATCGCCACTCAGTAGATCATTCATGGTTTTTCAGGAGACTCTGGTGGGACGCTGGAAGACTGTTTGGATAAAAAGACACtgactttttcttcttcttctttttgtaATGGACTGTTTTAAGCGGTCGCCTTTTGATGCCAGTTGGGGTGGGCGGGGTTTTGAGGATGTGGGCGGGGTTTTGGGGATCAAGCATGTGACTCATTGGaaccgtttgtttgtttgtttgtttgttttcccacACCAGTGTTGGTGCTGTAGTGACACCCCAAACGTTTCTGGGCTCCTACTAAAACTTGAGTTTCATATCAGCTGTATAGATGTTAGTTTGAGGAACGGAAATCATGTCTTACCTTTGCAACGACTATTTATTGTCTGTACAGAACAAGCTTTGGATTTTTAACAAA

Function

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0005575 cellular_component cellular_component
GO:0008157 protein phosphatase 1 binding molecular_function
GO:0004864 protein phosphatase inhibitor activity molecular_function
GO:0019888 protein phosphatase regulator activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-156 Predicted to enable actin binding activity. Predicted to be involved in actin cytoskeleton organization. Is expressed in adaxial cell; myotome; nervous system; and somite. Orthologous to human PHACTR3 (phosphatase and actin regulator 3).

Ensembl:

ensembl_id ENSDART00000050762

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007336 lncRNA downstream 22103 1396300 ~ 1400634 (-) False XLOC_003810
TCONS_00008440 lncRNA downstream 334108 1069407 ~ 1088629 (-) True XLOC_003806
TCONS_00008729 lncRNA downstream 334110 1065161 ~ 1088627 (-) False XLOC_003806
TCONS_00007329 lncRNA downstream 334110 1065161 ~ 1088627 (-) False XLOC_003806
TCONS_00007328 lncRNA downstream 404192 1014962 ~ 1018545 (-) True XLOC_003805
TCONS_00008730 lncRNA upstream 93955 1603728 ~ 1605287 (-) True XLOC_003814
TCONS_00008731 lncRNA upstream 344658 1854431 ~ 1867925 (-) True XLOC_003815
TCONS_00008732 lncRNA upstream 401778 1911551 ~ 1915454 (-) False XLOC_003816
TCONS_00008733 lncRNA upstream 403994 1913767 ~ 1914730 (-) True XLOC_003816
TCONS_00008734 lncRNA upstream 406190 1915963 ~ 1920521 (-) True XLOC_003817
TCONS_00007338 mRNA downstream 13501 1403741 ~ 1409236 (-) True XLOC_003811
TCONS_00007335 mRNA downstream 22107 1396300 ~ 1400630 (-) False XLOC_003810
TCONS_00007334 mRNA downstream 22127 1396170 ~ 1400610 (-) False XLOC_003810
TCONS_00007337 mRNA downstream 22230 1396301 ~ 1400507 (-) True XLOC_003810
TCONS_00007333 mRNA downstream 30269 1337620 ~ 1392468 (-) True XLOC_003809
TCONS_00007341 mRNA upstream 37453 1547226 ~ 1550709 (-) True XLOC_003813
TCONS_00007342 mRNA upstream 416031 1925804 ~ 1935883 (-) False XLOC_003818
TCONS_00007343 mRNA upstream 416931 1926704 ~ 1933793 (-) True XLOC_003818
TCONS_00007344 mRNA upstream 434956 1944729 ~ 1967438 (-) False XLOC_003819
TCONS_00007345 mRNA upstream 435282 1945055 ~ 1956204 (-) False XLOC_003819
TCONS_00007330 other downstream 334222 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 442989 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 962807 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 1071036 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 2443950 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 4562187 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 4687503 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 5270935 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 5434527 6944300 ~ 6948018 (-) False XLOC_003898

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU279114 True 141 TUCP 0.47 1 CI01000057 5914715 ~ 5914855 (+)
tiger barb (Puntius tetrazona) TU279114 True 1868 TUCP 0.40 6 NW_025048355.1 1827993 ~ 1889405 (-)