XLOC_003814


Basic Information

Item Value
gene id XLOC_003814
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 1603728 ~ 1605287 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008730
CATTCCAGGCTTTCTGAGTTCACAGCTCACTGCTGCTGATGCCAGTTTCTGGTAGAGGTGTGTTAAAGCTCTGACCGCGTGACCTTCGAGATTCACATGCTGATCACCTTTAGATCGAGCCTGAACCTTAACTACATTCTTCTGAAGATCTGCAGTAAATGACACTCCATATTTGGCTTCAAGTTCTGATAGTTGTTCCTCATAGGAAAGCTTCATCAGATCCCAGTGAACCTCGTCCATCTCAAGTTGAGTTGGAAGATCTCGTGTGTTCATGTCCAGTGTAGGTCTGCTTTGAGGTGGAAAACTGCTGTCTACTCCCATTAGATAAGCGTTGCTGTCTATATTCATTGGGATTGATCTACTATTGGACTGACCTTCTCCTCTTCTTGTTTCTTCTTTAATCATGTCTGTAAATTTCTTTGGTCCTAAAAACAGGCCATCACTGTCAGTCAGAGTGAACATCAGCTTTGTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008730 True 472 lncRNA 0.43 2 1603728 1605287

Neighbor

gene id symbol gene type direction distance location
XLOC_003813 si:ch73-303b9.1 coding downstream 53019 1547226 ~ 1550709 (-)
XLOC_003812 phactr3b coding downstream 93955 1422737 ~ 1509773 (-)
XLOC_003811 si:ch211-266k22.6 coding downstream 194492 1403741 ~ 1409236 (-)
XLOC_003810 rpl29 coding downstream 203094 1396170 ~ 1400634 (-)
XLOC_003809 iars1 coding downstream 211260 1337620 ~ 1392468 (-)
XLOC_003815 NA coding upstream 249144 1854431 ~ 1867925 (-)
XLOC_003816 NA coding upstream 306264 1911551 ~ 1915454 (-)
XLOC_003817 NA coding upstream 310676 1915963 ~ 1920521 (-)
XLOC_003818 faim2b coding upstream 320517 1925804 ~ 1935883 (-)
XLOC_003819 nr1d4b coding upstream 339442 1944729 ~ 1967438 (-)
XLOC_003938 BX324177.10 misc upstream 9733517 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 9762307 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 9765168 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 9775617 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 9778546 11383833 ~ 11384130 (-)
XLOC_003806 NA non-coding downstream 515099 1065161 ~ 1088629 (-)
XLOC_003804 NA non-coding downstream 617988 931493 ~ 985740 (-)
XLOC_003803 CABZ01066384.1 non-coding downstream 623980 923795 ~ 979748 (-)
XLOC_003802 NA non-coding downstream 712054 815925 ~ 891674 (-)
XLOC_003799 CABZ01069324.1 non-coding downstream 1002420 599440 ~ 601308 (-)
XLOC_003821 NA non-coding upstream 605778 2211065 ~ 2222440 (-)
XLOC_003825 NA non-coding upstream 710209 2315496 ~ 2316213 (-)

Expression


Co-expression Network