XLOC_003799 (CABZ01069324.1)


Basic Information

Item Value
gene id XLOC_003799
gene name CABZ01069324.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 599440 ~ 601308 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007316
ttctcactcccaactcgtcacatactgacgcttggtcaggaaccctcggcgtcagttattgacgcacagggtacccctttagcgtcatatttagacgtgcagggattccctatagaatctgtgcctgagcctgaggcgtcatatggagacgctggaggctcgtataattaccaatagatgtcaacgcaatttttaaaacctgatttacgcctattatcttagttttcttattttaaaaatatgtaatttttattttgttcatgaaaagcgtctgtaaacggggtcgaaactactgtatgaataaacttcggcccacgtgacatcccttcacgtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTTAGTGAAGTTTTTCATTccatgtatattaaatatctacattgtttaggcatatatgattgtatgagataaaatgcatttattctttcactactattgtaataacagaaagaaacgcattagttttactattactattgtttatgacaaacattaaaaaactacagCATAAGCTTACAAAATATTGTGGCCTAACTGTTTAAAACTAATTGTTCTGGGTGTTG
>TCONS_00007317
acacgttctcactcccaactcgtcacatactgacgcttggtcaggaaccctcggcgtcagttattgacgcacagggtacccctttagcgtcatatttagacgtgcagggattccctatagaatctgtgcctgagcctgaggcgtcatatggagacgctggaggctcgtataattaccaatagatgtcaacgcaatttttaaaacctgatttacgcctattatcttagttttcttattttaaaaatatgtaatttttattttgttcatgaaaagcgtctgtaaacggggtcgaaactactgtatgaataaacttcggcccacgtgacatcccttcacggtgagtttaatGCCGCTccgctattggtcaaactgcatcagcggtgagttctcagatgagttcaactgtcaacattaaatattacgttaatgctgcataatatatttttattggagattagttggtgtttataaatatgttatcatttactttatatttaatgagtgaaaatatattcggttgtccagtttagggtaactatgcctaataaaactttgattcattcatattatttattatttactttattattttactttaaaaaaatattaaatttcaagtactaagtttaaaaatgttttcagctgatatttttcattttaaattatttattaaagttggggtcattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105326

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007316 False 768 lncRNA 0.39 3 599440 601303
TCONS_00007317 True 829 lncRNA 0.36 2 599758 601308

Neighbor

gene id symbol gene type direction distance location
XLOC_003798 tsen2 coding downstream 2935 588017 ~ 596505 (-)
XLOC_003796 CU695207.1 coding downstream 23654 543362 ~ 575786 (-)
XLOC_003797 CU695207.2 coding downstream 51042 545461 ~ 548398 (-)
XLOC_003795 cnbpb coding downstream 101586 491587 ~ 497854 (-)
XLOC_003794 isy1 coding downstream 112908 474433 ~ 486532 (-)
XLOC_003800 pparg coding upstream 8208 609516 ~ 669558 (-)
XLOC_003801 syn2b coding upstream 73988 675296 ~ 762721 (-)
XLOC_003802 NA coding upstream 214617 815925 ~ 891674 (-)
XLOC_003803 CABZ01066384.1 coding upstream 322487 923795 ~ 979748 (-)
XLOC_003804 NA coding upstream 330185 931493 ~ 985740 (-)
XLOC_003938 BX324177.10 misc upstream 10737496 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 10766286 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 10769147 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 10779596 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 10782525 11383833 ~ 11384130 (-)
XLOC_003793 CR855375.4 non-coding downstream 139510 459815 ~ 459930 (-)
XLOC_003788 NA non-coding downstream 229754 369127 ~ 369686 (-)
XLOC_003787 CR855375.2 non-coding downstream 247739 349113 ~ 351701 (-)
XLOC_003781 NA non-coding downstream 404725 193460 ~ 194715 (-)
XLOC_003806 NA non-coding upstream 463853 1065161 ~ 1088629 (-)
XLOC_003814 NA non-coding upstream 1002420 1603728 ~ 1605287 (-)

Expression


Co-expression Network