XLOC_003801 (syn2b)


Basic Information

Item Value
gene id XLOC_003801
gene name syn2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 675296 ~ 762721 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007320
TGGCATTGCATTGGAGCTGTCAGTGCATGAAGACGGAGAAATTCAGCAGCAGCATCAGCACACAGTCTTAAAGCGGAGATTCCTGGAAAGCCAGAGCTGATTTTCCCCAGTCGCTGACGCTCACCGTTGAAGATCTGAGAGTTTAACCTTCACAGCCATGAACTTCCTGCGTCGTCGTCTCTCTGACAGCAGCTTCATCGCTAATCTGCCCAATGGCTACATGTCGGACCTCCAGCGTCCGGACCCGCCGCCGCCCCCTCCAGCCGACGCCAAACCTCCATCCGGATCCCCTGCCGCCCCATTGGCCCCTGCAGAAAACAGGTCTCCGTCTTCATCTCCGGCTCCAGAGCGGCGTCCGCAGCCGGCTCCATCCAGCGGCTCCGGCTTCTTCAGCTCCATCACTAACGTAGTCAAGCAGACGGCGGCATCTGCGGGACTCGTGGAGCAAAGCCCTGCCACCGCTTCCCGGAAGTTCAAGATCCTGCTGGTCATCGACGAACCCCAGAATGATTGGACAAAGCTTTTTCGTGGGAAGAAGGTGCAAGGAGATTATGACATCAAAGTGGAGCAGgctgAGTTCAGTGAGATTAATCTGGTGGCTCATGCTAACGGCACGTGCAGTGTGGACATGCAGGTCATCAGAAACGGCACCAAAGTGGTCCGCTCCTTCAAGCCTGATTTTGTCCTGGTTCGACAGCATGCCTACAGTATGGCACAGAATGAAGACTTCAGGAACATCATCATCGGCTTACAGTACGCCGGCATTCCCAGCGTCAACTCACTGGAGTCCATCTACAACCTCTGTGACAAACCCTGGGCTtTCGCTCAGCTGATCAGCGTCTACAAGAAAATGGGTCCAGAAAAGTTCCCTCTGGTTGATCAGACCTTTTACTCCAACTACAGGGACATGATCTCGATGCCAACATTCCCAGTGGTGGTGAAGATTGGACATGCTCATTCTGGGATGGGGAAGGTGAAGGTTGACAATCACAGTGATTTCCAGGACATTGCGAGCGTTGTGGCCATCACTCAGACATACACCACCACTGAGCCTTTCATTGATGCCAAATACGACATCAGGGTGCAGAAGATCGGCTTTGATTATAAAGCCTACATGAGAACATCCATCTCAGGCAACTGGAAATCAAACACTGGATCTGCCATGCTGGAGCAAGTAGCCATGACTGACAAGTATAAGCTGTGGGTGGACACCTGTGCAGATGTGTTCGGAGGACTGGAAATCTGCGCCGTTAAAGCCATTCATGGAAAAGACGGGAAGGATTATATCACTGAGgtGGTGGGCTCCTCGATGCCTCTGATTGGTGAACATCAGATGGAGGACCGTCAGCTGATCACCGCCATCGTTTTGGCCAAAATGAACCACGAATCCAGCCGTATATCAGTGTGTGCCCAACAGAGACCTGCAGCCACCGTACAGCCTGCACagAGTCCTGCCTTAAAAGAAAGCCTGCCCGAGCCCATCAAGACCCCGGGTCAGCGTCCCCCTCCTCAAGGGGGGGCAGTGAAACCCCAAGAGCCACAACCTAAGAGTCAAGAACCTACACCTGAGCCAATCCCTGCCCAGGAACCTGTGCCCAAAGCAGGCCCAACCCCAACTCTGCCACCCACCACGCAGCAGCCCAAACCCCAAACCCAAGCGGCACCTGAACCCACTCCAGGGAAGCCAACGGATCTGCCCCCCAAACCCCAACCTCCCAAACCTCTTCCCCCGAAGCCTGTGCCTCCTGTTCGGAGAAACTCCAAACCTCAGATCCAACCAAAACCCCAAACCCCCCCTCCCGCTAAAGCTCTTCTGAAAGCAGACTCAGATCAGGATCCTGGTCAGATCAAGCCAGATTCAGTCCCTGCTCAAGAACAGTCCCCCGCCAGAGTTCCCATTAAACCCCCGTCACCAGCTAAACCTCAGCTCCAGCCTAAACCAGTGCTCAGAGAGCAAGCCAAACCTGAGGCTCGAGCTCAGCCTGCCGCCCCATCTGAAGCTGCATCAGCCCCTGTTAGAGCCACTCCAGCCCCTGCCCCAGCTCCAGCTCCAGCCCAACCTCCTGTGGAGGAACAGCCGGCACCCCAGCAGAAGTCATCCCATCCTCTCTTGAACAAGTCCCAGTCCCTGACCAACGCCTTTAATGCCTTCGGCGACACCTTCCGCTCCAGCAACGAGGACGAAGCAAAGGCAGAGACCATCCGAAACTTGCGAAAGTCTTTTGCAAGCCTGTTCTCTGACTAATGGCCAAATCCCAAAACCACTGAGGGTGGCCAGGGACTCGTCCGACAGATATGCATCCTGGTCTGAGGTTAACTCCATGTAGCCGTGTACATTCAACCTCTCC

Function

symbol description
syn2b Predicted to enable ATP binding activity. Predicted to be involved in neurotransmitter secretion. Predicted to be located in synaptic vesicle. Predicted to be active in synaptic vesicle membrane. Is expressed in DEL; nervous system; spinal cord neural tube; and yolk syncytial layer. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human SYN2 (synapsin II).

GO:

id name namespace
GO:0007269 neurotransmitter secretion biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0005524 ATP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051127-49 Predicted to enable ATP binding activity. Predicted to be involved in neurotransmitter secretion. Predicted to be located in synaptic vesicle. Predicted to be active in synaptic vesicle membrane. Is expressed in DEL; nervous system; spinal cord neural tube; and yolk syncytial layer. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human SYN2 (synapsin II).

Ensembl:

ensembl_id ENSDARG00000101054

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007320 True 2348 mRNA 0.55 13 675296 762721

Neighbor

gene id symbol gene type direction distance location
XLOC_003800 pparg coding downstream 5738 609516 ~ 669558 (-)
XLOC_003799 CABZ01069324.1 coding downstream 73988 599440 ~ 601308 (-)
XLOC_003798 tsen2 coding downstream 78791 588017 ~ 596505 (-)
XLOC_003796 CU695207.1 coding downstream 99510 543362 ~ 575786 (-)
XLOC_003797 CU695207.2 coding downstream 126898 545461 ~ 548398 (-)
XLOC_003802 NA coding upstream 53204 815925 ~ 891674 (-)
XLOC_003803 CABZ01066384.1 coding upstream 161074 923795 ~ 979748 (-)
XLOC_003804 NA coding upstream 168772 931493 ~ 985740 (-)
XLOC_003805 slc6a1b coding upstream 234379 997100 ~ 1024483 (-)
XLOC_003806 NA coding upstream 302440 1065161 ~ 1088629 (-)
XLOC_003938 BX324177.10 misc upstream 10576083 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 10604873 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 10607734 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 10618183 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 10621112 11383833 ~ 11384130 (-)
XLOC_003793 CR855375.4 non-coding downstream 215366 459815 ~ 459930 (-)
XLOC_003788 NA non-coding downstream 305610 369127 ~ 369686 (-)
XLOC_003787 CR855375.2 non-coding downstream 323595 349113 ~ 351701 (-)
XLOC_003814 NA non-coding upstream 841007 1603728 ~ 1605287 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000057_05564489_05579041 NA misc CI01000057 null 5564489 ~ 5579843 (+)