XLOC_003788


Basic Information

Item Value
gene id XLOC_003788
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 369127 ~ 369686 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008725
gAGGGGGAGGGGCTAATGATGAAGGGGGAGGAGCAACAAATGAGGAGGAGGGGTTGATGATGAATGGGGAGGAGCAACAAATGAGAAGATGGGCTGATGATAAATGGGGAGGAGTAAGCAATGAAGGGGAGGGACTGATGATTAATGGGGAGGAGCAAGAAACAaaggggaggggctgatgatgAATGGGGAAGAGCAACAAATGAGGGGGAGGGACTGATGATGAATGGGGAGGAGCAAAAAAGGGGGAGGGGCTGATGGTGAATGGGAAGGAGCAACAAACGAAGGAGAGGGGCTGATGATGAATGGGGAGGAGCAACAAAAGAAGGGGGGAGGCATTGATGAATGGGGAGGAGCAACAAATGAAGGGGAGAGGCATTGATAAATGGGGAGGAGCAACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008725 True 401 lncRNA 0.52 2 369127 369686

Neighbor

gene id symbol gene type direction distance location
XLOC_003787 CR855375.2 coding downstream 17426 349113 ~ 351701 (-)
XLOC_003786 poc1a coding downstream 59707 306007 ~ 309420 (-)
XLOC_003785 slc11a2 coding downstream 81457 281833 ~ 287670 (-)
XLOC_003784 npffl coding downstream 89799 276057 ~ 279328 (-)
XLOC_003783 alas1 coding downstream 98917 260763 ~ 270210 (-)
XLOC_003789 CR855375.5 coding upstream 24807 394493 ~ 396724 (-)
XLOC_003790 znf831 coding upstream 41184 410870 ~ 426525 (-)
XLOC_003791 nuf2 coding upstream 60090 429776 ~ 438518 (-)
XLOC_003792 zgc:77375 coding upstream 87737 457423 ~ 472547 (-)
XLOC_003793 CR855375.4 coding upstream 90129 459815 ~ 459930 (-)
XLOC_003938 BX324177.10 misc upstream 10969118 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 10997908 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 11000769 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 11011218 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 11014147 11383833 ~ 11384130 (-)
XLOC_003781 NA non-coding downstream 174412 193460 ~ 194715 (-)
XLOC_003780 CU633745.1 non-coding downstream 178666 183570 ~ 190461 (-)
XLOC_003776 NA non-coding downstream 239961 128158 ~ 129166 (-)
XLOC_003773 CABZ01072245.1 non-coding downstream 297587 61190 ~ 71540 (-)
XLOC_003797 CU695207.2 non-coding upstream 175775 545461 ~ 548398 (-)
XLOC_003799 CABZ01069324.1 non-coding upstream 229754 599440 ~ 601308 (-)
XLOC_003802 NA non-coding upstream 446239 815925 ~ 891674 (-)
XLOC_003803 CABZ01066384.1 non-coding upstream 554109 923795 ~ 979748 (-)

Expression


Co-expression Network