XLOC_003791 (nuf2)


Basic Information

Item Value
gene id XLOC_003791
gene name nuf2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 429776 ~ 438518 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007300
gttgttgttatgaggGCGGTCTGTGTTGTGCCAGTAAACAGTGAAGTGTCGCTCAGTACTTCATTACAGTCATTTGTTTCTCTTGAGCAGCAGACATGTCTGAAAACACGTTCCCGGTGTACAAAGTGGATGTTATAGTGCAGTTTTACCGAACTGAGGTTTTGACTGGACAAGAGTCTAAACATTTCACCAAGAATGACCTCACTCCGACTCCTAAGCCAGAATCCGTTCAAAGGCTCTACATGAGAATTTTGCAGCTTCTCTTTCGTTTCAGACCTGAGTGCCATTACACGGTGCCGCTGTCTGAAAACATTCAGTACCCGATGCTGTACGAGTCGTTTGCTCCAATCATGAGCGTTTACATGCGCATGTGCCAGTTTTTACCGGTCTGCCGTGTGTATGATTTTTCACTGAGTGATCTGCTCAACCCCAAGACGAAGCGAACAATCACTATACTCAGCGCAATCCAGAATTTCCTGCACTTCAGAAAGCAGAGGTTGGAAATTACTGCAGCCCACCAGCAAAGTTTTCGAGCTGATATGGACCGACTCCAGGCATACACAAGAGAAATAAAAGAGGCTGAGAAGAAGATTGAGAAGCTGACTACCATACCACCAGAGCAGCAAGCAGAAGCTAAAGAGCTGGCGTCCGCCCTGGCAGAGCTGAGCACTAACACACAGCATGAATACCAAGATGTGAGCGCAATTAATGAAAAGGTTGCACAGTTCAAGACGGAAATTGCGGAGCTGTCACAGAAACTGACTCAAAGGAAAGTAGAAGTGGCGACACTGAAGGATGAAATATCAAAGCTCAAGTCTCAGATCGTGGAGTCGCCTGAAGAGCTGAAAAATGAAATGGAAAGAATGAGAGAGACTGCGAAGAACATCAAGATGTCGAAAgagCTGGCGGATGAGCGGCTGGTGGAGCTGCAGATGCTGGTTCAGTGTGCCAGTCAGGTGGAGGCAGAAATCCAGATCCTGCTCAAACAGCTGCAGGACTTGCAGAGCAGCATGAGCAAGACCAAACAGCGAAAAGAGGAGGTTCAGAGTTTAGAAGTCATGAATGAAAGCTTGCAGAAAGAGCTGAAAAGCCTGAGCAGTGAAGAAGCCCAGCTGAAGAGGGCGCTCACCATGAAACTCGACAAGGAGTCCAAACAACAGATTCGTAGACAGAAGAAAAAAGAGGTGAAAGATCAGCAAGTCAAAAATATTTATGGACAATATGACAAAATGCACCAGAAACGGCaggaaattgtgaaaaaaattgaAGAATGCAACCGTGAAACAAAACAGTTTAAGGAAAAAATGCAGGCACTGAGAGAGAATTGCAATCAACGGACTCAAAAAGCCCAGGAAATTTATGAACGACTCCTCACAACATTGGAGCAGTATCACAAGCGGATCGAAAAGATTTTGGTGGAGACTAATGCTGACGCTCTGAAAATGAAGTCACATTTCTAGAGTGATTTGTTTGTACAATGGTTGTGTCATTTGtttcattgtgtttgtgtgttatgtATTGTCCCCTCTCCTTTACATTCAAAAGATGAATGAACAGTTGCATTTAC
>TCONS_00007301
GTAGCGGAAGTGACGTCAAAGGAGGCGCCTAAAGTTTAAAATTTGCTTCAGTTGACGGCGAGGGACGTTGTTGTGAACTTGGCTGCAGACATGTCTGAAAACACGTTCCCGGTGTACAAAGTGGATGTTATAGTGCAGTTTTACCGAACTGAGGTTTTGACTGGACAAGAGTCTAAACATTTCACCAAGAATGACCTCACTCCGACTCCTAAGCCAGAATCCGTTCAAAGGCTCTACATGAGAATTTTGCAGCTTCTCTTTCGTTTCAGACCTGAGTGCCATTACACGACTCAAAGGAAAGTAGAAGTGGCGACACTGAAGGATGAAATATCAAAGCTCAAGTCTCAGATCGTGGAGTCGCCTGAAGAGCTGAAAAATGAAATGGAAAGAATGAGAGAGACTGCGAAGAACATCAAGATGTCGAAAgagCTGGCGGATGAGCGGCTGGTGGAGCTGCAGATGCTGGTTCAGTGTGCCAGTCAGGTGGAGGCAGAAATCCAGATCCTGCTCAAACAGCTGCAGGACTTGCAGAGCAGCATGAG
>TCONS_00007302
GCCTAAAGTTTAAAATTTGCTTCAGTTGACGGCGAGGGACGTTGTTGTGAACTTGGCTGCAGACATGTCTGAAAACACGTTCCCGGTGTACAAAGTGGATGTTATAGTGCAGTTTTACCGAACTGAGGTTTTGACTGGACAAGAGTCTAAACATTTCACCAAGAATGACCTCACTCCGACTCCTAAGCCAGAATCCGTTCAAAGGCTCTACATGAGAATTTTGCAGCTTCTCTTTCGTTTCAGACCTGAGTGCCATTACACGGTGCCGCTGTCTGAAAACATTCAGTACCCGATGCTGTACGAGTCGTTTGCTCCAATCATGAGCGTTTACATGCGCATGTGCCAGTTTTTACCGGTCTGCCGTGTGTATGATTTTTCACTGAGTGATCTGCTCAACCCCAAGACGAAGCGAACAATCACTATACTCAGCGCAATCCAGAATTTCCTGCACTTCAGAAAGCAGAGGTTGGAAATTACTGCAGCCCACCAGCAAAGTTTTCGAGCTGATATGGACCGACTCCAGGCATACACAAGAGAAATAAAAGAGGCTGAGAAGAAGATTGAGAAGCTGACTACCATACCACCAGAGCAGCAAGCAGAAGCTAAAGAGCTGGCGTCCGCCCTGGCAGAGCTGAGCACTAACACACAGCATGAATACCAAGATGTGAGCGCAATTAATGAAAAGGTTGCACAGTTCAAGACGGAAATTGCGGAGCTGTCACAGAAACTGACTCAAAGGAAAGTAGAAGTGGCGACACTGAAGGATGAAATATCAAAGCTCAAGTCTCAGATCGTGGAGTCGCCTGAAGAGCTGAAAAATGAAATGGAAAGAATGAGAGAGACTGCGAAGAACATCAAGATGTCGAAAgagCTGGCGGATGAGCGGCTGGTGGAGCTGCAGATGCTGGTTCAGT

Function

symbol description
nuf2 Acts upstream of or within heart development. Predicted to be located in kinetochore and nucleus. Predicted to be part of Ndc80 complex. Is expressed in proliferative region. Human ortholog(s) of this gene implicated in castration-resistant prostate carcinoma and pancreatic cancer. Orthologous to human NUF2 (NUF2 component of NDC80 kinetochore complex).

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0045132 meiotic chromosome segregation biological_process
GO:0007049 cell cycle biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0051301 cell division biological_process
GO:0051315 attachment of mitotic spindle microtubules to kinetochore biological_process
GO:0051383 kinetochore organization biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0000776 kinetochore cellular_component
GO:0000778 condensed nuclear chromosome kinetochore cellular_component
GO:0031262 Ndc80 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0044877 protein-containing complex binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-1121 Acts upstream of or within heart development. Predicted to be located in kinetochore and nucleus. Predicted to be part of Ndc80 complex. Is expressed in proliferative region. Human ortholog(s) of this gene implicated in castration-resistant prostate carcinoma and pancreatic cancer. Orthologous to human NUF2 (NUF2 component of NDC80 kinetochore complex).

Ensembl:

ensembl_id ENSDARG00000034624

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007300 False 1567 mRNA 0.45 13 429776 438294
TCONS_00007301 False 542 mRNA 0.48 5 431018 438518
TCONS_00007302 True 914 mRNA 0.47 11 431088 438492

Neighbor

gene id symbol gene type direction distance location
XLOC_003790 znf831 coding downstream 3251 410870 ~ 426525 (-)
XLOC_003789 CR855375.5 coding downstream 33052 394493 ~ 396724 (-)
XLOC_003788 NA coding downstream 60090 369127 ~ 369686 (-)
XLOC_003787 CR855375.2 coding downstream 78075 349113 ~ 351701 (-)
XLOC_003786 poc1a coding downstream 120356 306007 ~ 309420 (-)
XLOC_003792 zgc:77375 coding upstream 18905 457423 ~ 472547 (-)
XLOC_003793 CR855375.4 coding upstream 21297 459815 ~ 459930 (-)
XLOC_003794 isy1 coding upstream 35915 474433 ~ 486532 (-)
XLOC_003795 cnbpb coding upstream 53069 491587 ~ 497854 (-)
XLOC_003796 CU695207.1 coding upstream 104844 543362 ~ 575786 (-)
XLOC_003938 BX324177.10 misc upstream 10900286 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 10929076 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 10931937 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 10942386 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 10945315 11383833 ~ 11384130 (-)
XLOC_003781 NA non-coding downstream 235061 193460 ~ 194715 (-)
XLOC_003780 CU633745.1 non-coding downstream 239315 183570 ~ 190461 (-)
XLOC_003776 NA non-coding downstream 300610 128158 ~ 129166 (-)
XLOC_003797 CU695207.2 non-coding upstream 106943 545461 ~ 548398 (-)
XLOC_003799 CABZ01069324.1 non-coding upstream 160922 599440 ~ 601308 (-)
XLOC_003802 NA non-coding upstream 377407 815925 ~ 891674 (-)
XLOC_003803 CABZ01066384.1 non-coding upstream 485277 923795 ~ 979748 (-)

Expression


Co-expression Network