XLOC_003795 (cnbpb)


Basic Information

Item Value
gene id XLOC_003795
gene name cnbpb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 491587 ~ 497854 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007307
CTGTGATGGATCACCGGAGCCTGTGTGCGGGAGCAGCGGGCCGTGCGCAGAGCAGTAGGCGGGGCAGGGGGAGGAGCTTGCCGTGCGCAGCGGTGGGCGGGTTAGCAAGTGGGAGGGGTCTGCCGTCAGCGTGCCGTGCGCAAACCGCGTGTGGCGCAGCGCAGAGAGGAGGAACCGAAAATAAACAGCAACGAGTCACGTCGCCGAGTTGTAGGGTGAAGTCTGAGGATATGAGCAGCAACGAGTGTTTTGGTTGTGGCCGTACGGGTCATTGGATCAAGAACTGTCCCAATGCTGGACGTGGACGTGGGAAGGGCCGCGGCAGAGGAAAAGATCTTTTCTGCTATCGCTGTGGAGAACCAGGTCATGTTGCGAGAGATTGTGAGAGGACTGAAGATGCGTGCTACAACTGCGGCAGAGGCGGCCACATCTCCAGGGACTGCAAGGAGCCCAAGAAGGAGCGCGAGCAGGTGTGCTATAACTGCGGTAAAGCCGGACACATGGCGCGCGACTGCGACCACGCCAATGAGCAAAAGTGCTACTCCTGCGGCGGATTCGGACACATCCAGAAGGGCTGCGAAAAAGTCAAGTGCTACAGGTGTGGAGAGATCGGTCACGTGGCTGTTCAGTGCAGCAAGGCCAGCGAAGTCAACTGCTACAACTGCGGCAAATCGGGCCACGTGGCGAAGGAGTGCACCATCGAGGCCACCGCTTAATCCCGCCGCCTCCTTCGCCCCTCCTTTTTCTGATTGATGGTTGTATTATTTTCTCTGAATCCTCTTCACTGGCCATCGGTTGGCAGATAGAGGCTATTCCCAGGCCAGTGAGCTCTTGACATGTAAAAGGAGGAAAGGGGTGGAAAAAAAACTTTCCACTTTCtgcatttaatacaaaaaaatgtttatgtttagtttgGTAGAGGTGTTATGTATAATGCTTTGTTAAAGAACCCCCTTTCCATGCCACTGGTGAACAGGGatgtgtgagattgtgttgagtgGAAGAACGTTTGTTGGCTCGCGGATCGCGGCCTCGGAGAGatcgggaaaaaaatatataataacatggTCAAAAATAACCATACAGATCAGGGAAGCGCCGGCTTCCTCGAtgatttgcgtttttttttttttgttgttgttttctcaaTGAGACTGAGGTAGCCTATGAGTGATTGACCTGGAAGAGCAGCACAGGACACAAACGGTCGGGTCTGTCCAGGCCAAACCAGCAGTACGCAGCTATGTGGAGTGAAAACCGTAACGTGTAATATAAAGCAGACAACTTTATAGCATATTCTGGAAACCTTGTGTAAAACAGTTTCAGGAAACGAGTTCCTTTGTAAATCACGAGCTGTTTGATCATTCAGGATCGCTCGGCTGTGACGgcgaaagaaaaataaataaataaagaaaaagaaaaaaaaaactagttcaTGATCCCAAGCGATGCGGATGGAGGTCGTTCTACCCACGGTGAAAActtcagtaaaataaaaacaaaagaagacaaaaaaaataaagtacagaTTTGGAGTTTAGAAGAAAGGGTGAATGTTTTCACAGAaatcaaaatgttatttttgtacaATATCACGTAGACTACTCTAAAAATAAGGAGAAAAAAACTATCATTTGCTTGTACTCAGTTTTTAAGTCGGAAGGTAAATGCAACTAAAGTTCTAGGACATAGAAATGTAATTTTAAACTCAATAAATCTGGAGGAGGAAGGGGTGTCAAGACTGAA
>TCONS_00007308
CCGAAAATAAACAGCAACGAGTCACGTCGCCGAGGTGAGTTCCCATAAAGGACGAAAATACGACATTTAACTCGATGCATGTGGCGCAGTGAGACCGTCGCGGGTCTGCAGAGCGGTTCCGCTGTCGTGCAGTGTGTTTTTCTGGCGGATCTTTGAGCTCGGAATGCACAGAAGTCTGATTTTCTGACGGCGCACTTTGGCCTACTGCGACAGGCTGCGCTGCGAGCGGGAAAGTCATGCCGTTCCGTCGAGCGATCGCACGGTTTTTTGAGCTTAGAGAAAGCAGAAGCGGCCCGAGCTCGAGCTCATGTTTGAAGGATAGATTTAATGTCTCCGCGGGACCGGATGGGGAGCGGGTCTGTGGGCTCCAGCGGGACGGGGGAGCGGTTGTAGGGTGAAGTCTGAGGATATGAGCAGCAACGAGTGTTTTGGTTGTGGCCGTACGGGTCATTGGATCAAGAACTGTCCCAATGCTGGACGTGGACGTGGGAAGGGCCGCGGCAGAGGAAAAGATCTTTTCTGCTATCGCTGTGGAGAACCAGGTCATGTTGCGAGAGATTGTGAGAGGACTGAAGATGCGTGCTACAACTGCGGCAGAGGCGGCCACATCTCCAGGGACTGCAAGGAGCCCAAGAAGGAGCGCGAGCAGGTGTGCTATAACTGCGGTAAAGCCGGACACATGGCGCGCGACTGCGACCACGCCAATGAGCAAAAGTGCTACTCCTGCGGCGGATTCGGACACATCCAGAAGGGCTGCGAAAAAGTCAAGTGCTACAGGTGTGGAGAGATCGGTCACGTGGCTGTTCAGTGCAGCAAGGCCAGCGAAGTCAACTGCTACAACTGCGGCAAATCGGGCCACGTGGCGAAGGAGTGCACCATCGAGGCCACCGCTTAATCCCGCCGCCTCCTTCGCCCCTCCTTTTTCTGATTGATGGTTGTATTATTTTCTCTGAATCCTCTTCACTGGCCATCGGTTGGCAGATAGAGGCTATTCCCAGGCCAGTGAGCTCTTGACATGTAAAAGGAGGAAA

Function

symbol description
cnbpb Predicted to enable mRNA binding activity; single-stranded RNA binding activity; and translation regulator activity. Involved in positive regulation of innate immune response. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in myotonic dystrophy type 2. Orthologous to several human genes including CNBP (CCHC-type zinc finger nucleic acid binding protein).

GO:

id name namespace
GO:0045089 positive regulation of innate immune response biological_process
GO:2000767 positive regulation of cytoplasmic translation biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0045182 translation regulator activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003727 single-stranded RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7782 Predicted to enable mRNA binding activity; single-stranded RNA binding activity; and translation regulator activity. Involved in positive regulation of innate immune response. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in myotonic dystrophy type 2. Orthologous to several human genes including CNBP (CCHC-type zinc finger nucleic acid binding protein).

Ensembl:

ensembl_id ENSDARG00000070922

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007307 False 1746 mRNA 0.48 5 491587 497854
TCONS_00007308 True 1031 mRNA 0.56 5 492481 497680

Neighbor

gene id symbol gene type direction distance location
XLOC_003794 isy1 coding downstream 5055 474433 ~ 486532 (-)
XLOC_003792 zgc:77375 coding downstream 19040 457423 ~ 472547 (-)
XLOC_003793 CR855375.4 coding downstream 31657 459815 ~ 459930 (-)
XLOC_003791 nuf2 coding downstream 53069 429776 ~ 438518 (-)
XLOC_003790 znf831 coding downstream 65062 410870 ~ 426525 (-)
XLOC_003796 CU695207.1 coding upstream 45508 543362 ~ 575786 (-)
XLOC_003797 CU695207.2 coding upstream 47607 545461 ~ 548398 (-)
XLOC_003798 tsen2 coding upstream 90163 588017 ~ 596505 (-)
XLOC_003799 CABZ01069324.1 coding upstream 101586 599440 ~ 601308 (-)
XLOC_003800 pparg coding upstream 111662 609516 ~ 669558 (-)
XLOC_003938 BX324177.10 misc upstream 10840950 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 10869740 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 10872601 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 10883050 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 10885979 11383833 ~ 11384130 (-)
XLOC_003788 NA non-coding downstream 121901 369127 ~ 369686 (-)
XLOC_003787 CR855375.2 non-coding downstream 139886 349113 ~ 351701 (-)
XLOC_003781 NA non-coding downstream 296872 193460 ~ 194715 (-)
XLOC_003780 CU633745.1 non-coding downstream 301126 183570 ~ 190461 (-)
XLOC_003802 NA non-coding upstream 318071 815925 ~ 891674 (-)
XLOC_003803 CABZ01066384.1 non-coding upstream 425941 923795 ~ 979748 (-)
XLOC_003804 NA non-coding upstream 433639 931493 ~ 985740 (-)

Expression


Co-expression Network