XLOC_003794 (isy1)


Basic Information

Item Value
gene id XLOC_003794
gene name isy1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 474433 ~ 486532 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007305
ACTTTTACCGTCAGTTATGATCTCGCGGTCATGCCAGCATGTCTTTCAAAGCAGTGCTGTTTACATGTTATGAGTCTAATCAAAAAACCGACCTACCTGCGGTATATTCCTCAAATCCTCGATAGTTGTTTATTTCTGTCACGACTTGCCGCGCCGGAAGTTGTACAACGGATCACTGCGTCATACTCGTGCGTCGTGCGCGCTCAGCGTTGAGTTCACGCAGGATTGAAGATCTGAACTTCAAACATGgCTCGAAATGCAGAAAAGGCCATGACGGCCTTGGCCAGGTTTCGTCAAGCTCAGCTGGAGGAGGGAAAAGTGAAGGAGAGACGACCTTACCTTGCCTCAGAGTGTAATGAGCTGCCCAAAGCAGAGAAGTGGAGAAGACAGATCATCAGTGAGATTTCAAAGAAGGTTGCCCAGATTCAAAACGCTGGTTTGGGTGAGTTTAAGATTCGTGATCTGAACGATGAGATCAACAAACTGCTCCGGGAGAAAGGGCACTGGGAAGTGCGCATCAAGGAGCTCGGAGGACCCGACTATAGGAGATTTGGGCCGAAGATGTTGGACCATGAGGGTAAAGAGGTTCCTGGAAACAGAGGATACAAGTATTTCGGCGCTGCCAAAGATTTACCTGGAGTTCGAGAGCTGTTCGAATCTGAGCCTGTACCGCCACCCAGAAAGACACGAGCCGAGCTGATGAAGGACATCGATGCGGATTATTACGGTTACAGAGATGAAGATGACGGGGTTTTACTCCCACTGGAACAGGAATATGAGAAACAAGTGATGGCAGAGGCCGTGGAGAAGTGGAAAGCAGATAAAGAGGCTCGATTAGCCGTCGGTGGAGCCGTGAAAGAcactgaagaggaggaggaatATATTTACGCTGTCAGAGACGAGGAGCGGTCTGATGATGAAACGGGAGATCAGATGGAGGGAGAGGATGGAGCGCAGTCCTTCATCTCTCATGTTCCTGTGCCCTCGCAGAAGGAGATTGAGGAAGCGCTGGTGAGGAGGAAGAAGATGGAGCTGCTGCAGAAATACGCCAGCGAGAGTCTGATGGCACAGAGTCAAGAGGCCAAAGCTCTGCTGGGTTTATAGTGGACCAGCGTTTGGGTTTGACTGCTTCATATTCCAGTCTTGCATCTTAATGCGTCCAGATTCTTATGATTTCAGATGAGAACACATTAGCAGACTAATAACAGCGCTGATGCTGGAGTACGCTGAATGTGATTAAATGTGCTTGAAgatgcttaaagggacagttcacccaaacattacAACATACTCACCGATTACTCATGTGGATGCAGACCTTTCtgtcttctgctgaacactaaagaagatattctggAGGAAGGTAGaagcatgtaaccattgacttccatagtagggaaaactaATTCAGTGGAAGTCGAGGGTTTCCAGtattacttttctttttaaaatatattttaaaataaacaatgctgATAGACAGAAGGAGAATAACAAAATAAGACATACACAGTGAAGTGTTGGagataaacaaaatattacagaCATACTagtatacacacactttattagtgcatataataatgtaaaatgttatatataagtAATATACTGACCTCTaaatggtaaaattaaaaaagggggAAACAGTAATAATCAATAAATAGTTAATAGATGCAAATTTCTGCCTTTATTTTGGAAATTTCTGTGAAAATGTTTTGTGAAATTTCTTTTTTCCACTTCTGTGACTCGATCACTGTAAAGTCTTATATTGTGAAAGAGAGATCTGTTTATATTTGTAACAAGCACATACACCCATCCAGATTTCCAGCatgtttctaaatatcttctttaatgttcaacaCAAGACTCATAAACGTTTGAAACCAGTAACAAGCTATAAATTATGACCGATTTTTCATCATTGGCTGAACTATTatccaaaactgaacatttcctCACAATTTCCTTAAACTTTTATTGAATTTCTTCCTTCTGTGGAACATGAAGCATGATGTTGTGGAGGAAAAGCAGCCATTAAAATCAATAGTAGGAACAAAACTgaattctatggaagtcagtggctgctcttccagcattcttcaggaGAAAGCAAAACTCAAACGGGTTTGGATCAAGCAGAGGATATAACGACAGAATttaatttttggtgaactgtccctttaatctcCGGCTGTTGAtcctataaatgtgtgtgtgtgtcagtatctGCCTCAAACACACCGTCAGATCTGTCTGTTAATGaactgtttctgtattttgtgtttgtttgtggtggtgaactgcattatgggatgttgatctctgcgcTGTCCTCTTGTGATGTTgataattcaactctacagtttaacaaagtgacttttactgatttttttgtcatttaaaataatataatgtataagaattaatatctagagaaataagaaataacagaaaatgttctgCAGTTTAATGCAAGGcttctgtagcgtaatatacaacaccaacacacacacacactggacacGTGCAGAACACACACTTTTACAGGTTGAGAGTTGTTGGAGggaagatcaagatcccataatgcaactcaaaaacattaataatatatatgggggaatattaaaaacatgaagCACAAAATGCAGAAAGTGTATTGATGGTTTTAGTGTCTGATTAGATCCCTCGTGTTTCAGTCAGTGTTATGGGCTGTACTGTCACAGTACCTGTCTCATGCTGATCATGCTGAATTGTGCGTTGCATTTGAAACTGGATGACttgtagttgtttttgttgttgaaaattaAGAAATCTTTATTTGTTCAACCGTCAAAAGTAAACATCTGTAAATATTTTGTACACTATTTTCACTTTTGGACaagtaaaaatgctttttttaccaAA
>TCONS_00007306
CAGCGTTGAGTTCACGCAGGATTGAAGATCTGAACTTCAAACATGgCTCGAAATGCAGAAAAGGCCATGACGGCCTTGGCCAGGTTTCGTCAAGCTCAGCTGGAGGAGGGAAAAGTGAAGGAGAGACGACCTTACCTTGCCTCAGAGTGTAATGAGCTGCCCAAAGCAGAGAAGTGGAGAAGACAGGTCAGTCTCTGCAGGATGCTTTTCTGACAAATAATCAAGTCTGCATGGCATGGAGGTTGTGAAAGTTTGCTGTATTTTCCTCCTGCTTCATCTCAGCTTCTGGATCAAAAATAAATGTGGGCGGGGCTTCATTGTGTTTTGGGGAATTGTAGCGTTTTGTGCtttgctattggtggatctcTTATGAATGACAGGTTGGTCCTGCCCTCACGCCAGTAAAgtagagaataaataaatgactcaaTAATACCTCAAACATTTACATGCATTTCAAcctaaaggggcagttcacccacaaatgaacatTCTGTTCTCACCCTTGAGCTGTTTGAAACctttttgactttcttttttttctattaaacatattttgaagatattttgaacaaagctGAAACCCGTaacttctatagtatttattttttctattgtgGAGGTTATAAGTTTtctgctttctttaaaatgtcttctttagtgttcagctGGAGATggaaactcctaaaggtttggaactaTCTATTTACTATATACTATTTTGGTCAACTATCACTTTAAATCAGTTGCTATCTGTATTCTTGGTCATACACTATATAGGAACCTTAATGTTTGTGCTTTTTTAACCAATAAAGCAACTTATTTCTAAATACtttttatat

Function

symbol description
isy1 Predicted to be involved in generation of catalytic spliceosome for second transesterification step and mRNA 3'-splice site recognition. Predicted to be located in nucleus. Predicted to be part of Prp19 complex and spliceosomal complex. Orthologous to several human genes including ISY1-RAB43 (ISY1-RAB43 readthrough).

GO:

id name namespace
GO:0000350 generation of catalytic spliceosome for second transesterification step biological_process
GO:0000389 mRNA 3'-splice site recognition biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0071014 post-mRNA release spliceosomal complex cellular_component
GO:0071020 post-spliceosomal complex cellular_component
GO:0000974 Prp19 complex cellular_component

KEGG:

id description
ko03040 Spliceosome
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-030131-5864 Predicted to be involved in generation of catalytic spliceosome for second transesterification step and mRNA 3'-splice site recognition. Predicted to be located in nucleus. Predicted to be part of Prp19 complex and spliceosomal complex. Orthologous to several human genes including ISY1-RAB43 (ISY1-RAB43 readthrough).

Ensembl:

ensembl_id ENSDARG00000063466

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007305 False 2907 mRNA 0.40 11 474433 486532
TCONS_00007306 True 842 lncRNA 0.38 4 483255 486328

Neighbor

gene id symbol gene type direction distance location
XLOC_003792 zgc:77375 coding downstream 1886 457423 ~ 472547 (-)
XLOC_003793 CR855375.4 coding downstream 14503 459815 ~ 459930 (-)
XLOC_003791 nuf2 coding downstream 35915 429776 ~ 438518 (-)
XLOC_003790 znf831 coding downstream 47908 410870 ~ 426525 (-)
XLOC_003789 CR855375.5 coding downstream 77709 394493 ~ 396724 (-)
XLOC_003795 cnbpb coding upstream 5055 491587 ~ 497854 (-)
XLOC_003796 CU695207.1 coding upstream 56830 543362 ~ 575786 (-)
XLOC_003797 CU695207.2 coding upstream 58929 545461 ~ 548398 (-)
XLOC_003798 tsen2 coding upstream 101485 588017 ~ 596505 (-)
XLOC_003799 CABZ01069324.1 coding upstream 112908 599440 ~ 601308 (-)
XLOC_003938 BX324177.10 misc upstream 10852272 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 10881062 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 10883923 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 10894372 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 10897301 11383833 ~ 11384130 (-)
XLOC_003788 NA non-coding downstream 104747 369127 ~ 369686 (-)
XLOC_003787 CR855375.2 non-coding downstream 122732 349113 ~ 351701 (-)
XLOC_003781 NA non-coding downstream 279718 193460 ~ 194715 (-)
XLOC_003780 CU633745.1 non-coding downstream 283972 183570 ~ 190461 (-)
XLOC_003802 NA non-coding upstream 329393 815925 ~ 891674 (-)
XLOC_003803 CABZ01066384.1 non-coding upstream 437263 923795 ~ 979748 (-)
XLOC_003804 NA non-coding upstream 444961 931493 ~ 985740 (-)

Expression


Co-expression Network